Gene-set analysis and reduction (2009)
Dinu, Irina, Potter, John D., Mueller, Thomas, Liu, Qi, Adewale, Adeniyi J., Jhangri, Gian S., ...
Gene-set analysis aims to identify differentially expressed gene sets (pathways) by a phenotype in DNA microarray studies. We review here important methodological aspects of gene-set analysis and...
Irina Dinu, Qi Liu, John D. Potter, Adeniyi J. Adewale, Gian S. Jhangri, Thomas Mueller, ...
Gene-set analysis of microarray data evaluates biological pathways, or gene sets, for their differential expression by a phenotype of interest. In contrast to the analysis of individual genes,...
Bagshaw, Sean M., George, Carol, Dinu, Irina, Bellomo, Rinaldo
Background. The Acute Dialysis Quality Initiative Working Group recently developed the RIFLE criteria, a consensus definition for acute kidney injury (AKI). We sought to evaluate the RIFLE criteria...
A Cautionary Note on the Evaluation of Biomarkers of Subtypes of a Single Disease (2008)
Adewale, Adeniyi J., Liu, Qi, Dinu, Irina, Lampe, Paul D., Mitchell, Bree L., Yasui, Yutaka
Heterogeneity in the molecular characteristics of a disease presents a challenge to investigators attempting to identify biomarkers of the disease. Preceding the biomarker discovery effort with...
Comparative evaluation of gene-set analysis methods (2007)
Liu, Qi, Dinu, Irina, Adewale, Adeniyi J, Potter, John D, Yasui, Yutaka
Abstract Background Multiple data-analytic methods have been proposed for evaluating gene-expression levels in specific biological pathways, assessing differential expression associated with a binary...
Improving gene set analysis of microarray data by SAM-GS (2007)
Dinu, Irina, Potter, John D, Mueller, Thomas, Liu, Qi, Adewale, Adeniyi J, Jhangri, Gian S, ...
Abstract Background Gene-set analysis evaluates the expression of biological pathways, or a priori defined gene sets, rather than that of individual genes, in association with a binary phenotype, and...
Erosion Control Products from Sugarcane Bagasse (2006)
The erosion control industry uses different types of geosynthetics in order to mitigate the negative impact that erosion has on the environment. One of the most rapidly growing segments within this...
Erosion Control Products from Sugarcane Bagasse (2006)
The erosion control industry uses different types of geosynthetics in order to mitigate the negative impact that erosion has on the environment. One of the most rapidly growing segments within this...
Generalizations of ALB models / (2005)
A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Statistics, Dept. of Mathematical and...
Improving gene set analysis of microarray data by SAM-GS
Dinu, Irina, Potter, John D, Mueller, Thomas, Liu, Qi, Adewale, Adeniyi J, Jhangri, Gian S, ...
Comparative evaluation of gene-set analysis methods
Liu, Qi, Dinu, Irina, Adewale, Adeniyi J, Potter, John D, Yasui, Yutaka
Dinu, Irina, Liu, Qi, Potter, John D., Adewale, Adeniyi J., Jhangri, Gian S., Mueller, Thomas, ...
Gene-set analysis of microarray data evaluates biological pathways, or gene sets, for their differential expression by a phenotype of interest. In contrast to the analysis of individual genes,...