Version VI of the ESTree db: an improved tool for peach (2009)
Bmc Bioinformatics, Barbara Lazzari, Andrea Caprera, Alberto Vecchietti, Ivan Merelli, Francesca Barale, ...
transcriptome analysis
Chiappori, Federica, D'Ursi, Pasqualina, Merelli, Ivan, Milanesi, Luciano, Rovida, Ermanna
Abstract Background The design of mutants in protein functional regions, such as the ligand binding sites, is a powerful approach to recognize the determinants of specific protein activities in...
Merelli, Ivan, Caprera, Andrea, Stella, Alessandra, Del Corvo, Marcello, Milanesi, Luciano, Lazzari, Barbara
Abstract Background The NCBI dbEST currently contains more than eight million human Expressed Sequenced Tags (ESTs). This wide collection represents an important source of information for gene...
Lazzari, Barbara, Caprera, Andrea, Cestaro, Alessandro, Merelli, Ivan, Del Corvo, Marcello, Fontana, Paolo, ...
Abstract Background Two complete genome sequences are available for Vitis vinifera Pinot noir. Based on the sequence and gene predictions produced by the IASMA, we performed an in silico detection of...
Antonella Galizia, Federica Viti, Ivan Merelli, Luciano Milanesi, Andrea Clematis, C. Bischof, ...
to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that...
the Reconstruction of Molecular Surfaces (2008)
Ivan Merelli, Andrea Clematis, Luciano Milanesi, Ro Orro, C. Bischof, M. Bücker, ...
to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that...
Ontology-based, Tissue MicroArray oriented, image centered tissue bank (2008)
Viti, Federica, Merelli, Ivan, Caprera, Andrea, Lazzari, Barbara, Stella, Alessandra, Milanesi, Luciano
Abstract Background Tissue MicroArray technique is becoming increasingly important in pathology for the validation of experimental data from transcriptomic analysis. This approach produces many...
Bioinformatics Workflow using ASSIST on GRID (2008)
Ivan Merelli, Giulia Morra, Luciano Milanesi, Istituto Tecnologie, Biomediche Consiglio, Nazionale Ricerche
Workflows are very common in bioinformatics because they allow the elaboration of data by delegating the resources management to the information streaming. By the composition of different analysis...
Andrea Caprera, Barbara Lazzari, Ra Stella, Ivan Merelli, Re R. Caetano, Paola Mariani
Summary: The GoSh database is a collection of 58 990 Capra hircus and Ovis aries expressed sequence tags. A perl pipeline was prepared to process sequences, and data were collected in a MySQL...
Version VI of the ESTree db: an improved tool for peach transcriptome analysis (2008)
Lazzari, Barbara, Caprera, Andrea, Vecchietti, Alberto, Merelli, Ivan, Barale, Francesca, Milanesi, Luciano, ...
Abstract Background The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 19 peach...
The cell cycle DB: a systems biology approach to cell cycle analysis (2008)
Alfieri, Roberta, Merelli, Ivan, Mosca, Ettore, Milanesi, Luciano
The cell cycle database is a biological resource that collects the most relevant information related to genes and proteins involved in human and yeast cell cycle processes. The database, which is...
Mining the Bovine Genome with the "Bovine SNP Retriever" (2008)
Panzitta, Francesca, Caprera, Andrea, Merelli, Ivan, Milanesi, Luciano, Williams, John L., Lazzari, Barbara, ...
Online resources for the bovine genome analysis are provided at the most important Web sites. Nonetheless, retrieval of single-nucleotide polymorphism (SNP)–related information is not always easy...
GoSh: a web-based database for goat and sheep EST sequences (2007)
Caprera, Andrea, Lazzari, Barbara, Stella, Alessandra, Merelli, Ivan, Caetano, Alexandre R., Mariani, Paola
Summary: The GoSh database is a collection of 58 990 Capra hircus and Ovis aries expressed sequence tags. A perl pipeline was prepared to process sequences, and data were collected in a MySQL...
The cell cycle DB: a systems biology approach to (2007)
Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi
doi:10.1093/nar/gkm873
BMC Systems Biology Database (2007)
Roberta Alfieri, Ivan Merelli, Ettore Mosca, Luciano Milanesi, Biomed Central
A data integration approach for cell cycle analysis oriented to model simulation in systems biology
Merelli, Ivan, Morra, Giulia, D'Agostino, Daniele, Clematis, Andrea, Milanesi, Luciano
Abstract Background This study concerns the development of a high performance workflow that, using grid technology, correlates different kinds of Bioinformatics data, starting from the base pairs of...
Bmc Bioinformatics, Ivan Merelli, Giulia Morra, Andrea Clematis, Luciano Milanesi, Andrea Clematis, ...
Research article High performance workflow implementation for protein surface characterization using grid technology
High performance workflow implementation for protein surface characterization using grid technology
Merelli, Ivan, Morra, Giulia, D'Agostino, Daniele, Clematis, Andrea, Milanesi, Luciano
A data integration approach for cell cycle analysis oriented to model simulation in systems biology
Alfieri, Roberta, Merelli, Ivan, Mosca, Ettore, Milanesi, Luciano
The cell cycle DB: a systems biology approach to cell cycle analysis
Alfieri, Roberta, Merelli, Ivan, Mosca, Ettore, Milanesi, Luciano
The cell cycle database is a biological resource that collects the most relevant information related to genes and proteins involved in human and yeast cell cycle processes. The database, which is...
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Lazzari, Barbara, Caprera, Andrea, Vecchietti, Alberto, Merelli, Ivan, Barale, Francesca, Milanesi, Luciano, ...
Ontology-based, Tissue MicroArray oriented, image centered tissue bank
Viti, Federica, Merelli, Ivan, Caprera, Andrea, Lazzari, Barbara, Stella, Alessandra, Milanesi, Luciano
Lazzari, Barbara, Caprera, Andrea, Cestaro, Alessandro, Merelli, Ivan, Del Corvo, Marcello, Fontana, Paolo, ...