Clément-Ziza, Mathieu, Malabat, Christophe, Weber, Christian, Moszer, Ivan, Aittokallio, Tero, Letondal, Catherine, ...
Summary: Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The...
GenoList: an integrated environment for comparative analysis of microbial genomes (2008)
Lechat, Pierre, Hummel, Laurence, Rousseau, Sandrine, Moszer, Ivan
The multitude of bacterial genome sequences being determined has generated new requirements regarding the development of databases and graphical interfaces: these are needed to organize and retrieve...
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina (2008)
Rossignol, Tristan, Lechat, Pierre, Cuomo, Christina, Zeng, Qiandong, Moszer, Ivan, DEnfert, Christophe
CandidaDB (http://genodb.pasteur.fr/CandidaDB) was established in 2002 to provide the first genomic database for the human fungal pathogen Candida albicans. The availability of an increasing number...
From Gene Regulation to Gene Function: Regulatory Networks in Bacillus Subtilis (2006)
Bacillus subtilis is a sporulating Gram-positive bacterium that lives primarily in the soil and associated water sources. The publication of the B. subtilis genome sequence and subsequent systematic...
Specialized microbial databases for inductive exploration of microbial genome sequences (2005)
Fang, Gang, Ho, Christine, Qiu, Yaowu, Cubas, Virginie, Yu, Zhou, Cabau, Cédric, ...
Abstract Background The enormous amount of genome sequence data asks for user-oriented databases to manage sequences and annotations. Queries must include search tools permitting function...
SubtiList: the reference database for the Bacillus subtilis genome (2002)
Moszer, Ivan, Jones, Louis M., Moreira, Sandrine, Fabry, Cécilia, Danchin, Antoine
SubtiList is the reference database dedicated to the genome of Bacillus subtilis 168, the paradigm of Gram-positive endospore-forming bacteria. Developed in the framework of the B.subtilis genome...
From Gene Regulation to Gene Function: Regulatory Networks in Bacillus subtilis (2002)
Bacillus subtilis is a sporulating Gram-positive bacterium that lives primarily in the soil and associated water sources. The publication of the B. subtilis genome sequence and subsequent systematic...
The NRSub database: update 1997 (1997)
Guy Perrière, Ivan Moszer, Takashi Gojobori
In the context of the international project aiming at sequencing the whole genome of Bacillus subtilis we have developed NRSub, a non-redundant database of sequences from this organism. Starting from...
NRSub: a non-redundant database for Bacillus subtilis (1995)
Guy Perrière, Ivan Moszer, Takashi Gojobori
In the context of the international project aimed at sequencing the whole genome of Bacillus subtilis we have developed a non-redundant, fully annotated database of sequences from this organism....
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Chambaud, Isabelle, Heilig, Roland, Ferris, Stéphane, Barbe, Valérie, Samson, Delphine, Galisson, Frédérique, ...
Mycoplasma pulmonis is a wall-less eubacterium belonging to the Mollicutes (trivial name, mycoplasmas) and responsible for murine respiratory diseases. The genome of strain UAB CTIP is composed of a...
CotA of Bacillus subtilis Is a Copper-Dependent Laccase
Hullo, Marie-Françoise, Moszer, Ivan, Danchin, Antoine, Martin-Verstraete, Isabelle
The spore coat protein CotA of Bacillus subtilis displays similarities with multicopper oxidases, including manganese oxidases and laccases. B. subtilis is able to oxidize manganese, but neither CotA...
SubtiList: the reference database for the Bacillus subtilis genome
Moszer, Ivan, Jones, Louis M., Moreira, Sandrine, Fabry, Cécilia, Danchin, Antoine
SubtiList is the reference database dedicated to the genome of Bacillus subtilis 168, the paradigm of Gram-positive endospore-forming bacteria. Developed in the framework of the B.subtilis genome...
A revised annotation and comparative analysis of Helicobacter pylori genomes
Boneca, Ivo G., Reuse, Hilde De, Epinat, Jean-Charles, Pupin, Maude, Labigne, Agnès, Moszer, Ivan
Huge amounts of genomic information are currently being generated. Therefore, biologists require structured, exhaustive and comparative databases. The PyloriGene database...
Specialized microbial databases for inductive exploration of microbial genome sequences
Fang, Gang, Ho, Christine, Qiu, Yaowu, Cubas, Virginie, Yu, Zhou, Cabau, Cédric, ...
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Chambaud, Isabelle, Heilig, Roland, Ferris, Stéphane, Barbe, Valérie, Samson, Delphine, Galisson, Frédérique, ...
Mycoplasma pulmonis is a wall-less eubacterium belonging to the Mollicutes (trivial name, mycoplasmas) and responsible for murine respiratory diseases. The genome of strain UAB CTIP is composed of a...
CotA of Bacillus subtilis Is a Copper-Dependent Laccase
Hullo, Marie-Françoise, Moszer, Ivan, Danchin, Antoine, Martin-Verstraete, Isabelle
The spore coat protein CotA of Bacillus subtilis displays similarities with multicopper oxidases, including manganese oxidases and laccases. B. subtilis is able to oxidize manganese, but neither CotA...
SubtiList: the reference database for the Bacillus subtilis genome
Moszer, Ivan, Jones, Louis M., Moreira, Sandrine, Fabry, Cécilia, Danchin, Antoine
SubtiList is the reference database dedicated to the genome of Bacillus subtilis 168, the paradigm of Gram-positive endospore-forming bacteria. Developed in the framework of the B.subtilis genome...
A revised annotation and comparative analysis of Helicobacter pylori genomes
Boneca, Ivo G., Reuse, Hilde De, Epinat, Jean-Charles, Pupin, Maude, Labigne, Agnès, Moszer, Ivan
Huge amounts of genomic information are currently being generated. Therefore, biologists require structured, exhaustive and comparative databases. The PyloriGene database...
Specialized microbial databases for inductive exploration of microbial genome sequences
Fang, Gang, Ho, Christine, Qiu, Yaowu, Cubas, Virginie, Yu, Zhou, Cabau, Cédric, ...
GenoList: an integrated environment for comparative analysis of microbial genomes
Lechat, Pierre, Hummel, Laurence, Rousseau, Sandrine, Moszer, Ivan
The multitude of bacterial genome sequences being determined has generated new requirements regarding the development of databases and graphical interfaces: these are needed to organize and retrieve...
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina
Rossignol, Tristan, Lechat, Pierre, Cuomo, Christina, Zeng, Qiandong, Moszer, Ivan, D’Enfert, Christophe
CandidaDB (http://genodb.pasteur.fr/CandidaDB) was established in 2002 to provide the first genomic database for the human fungal pathogen Candida albicans. The availability of an increasing number...
From Gene Regulation to Gene Function: Regulatory Networks in Bacillus Subtilis
Harwood, Colin R., Moszer, Ivan
Bacillus subtilis is a sporulating Gram-positive bacterium that lives primarily in the soil and associated water sources. The publication of the B. subtilis genome sequence and subsequent systematic...
Clément-Ziza, Mathieu, Malabat, Christophe, Weber, Christian, Moszer, Ivan, Aittokallio, Tero, Letondal, Catherine, ...
Summary: Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The...