J. Petersen

Publication List Details

Period

1870 - 2008

Number

120

Co-Authors

First clinical use of ofatumumab, a novel fully human anti-CD20 monoclonal antibody in relapsed or refractory follicular lymphoma: results of a phase 1/2 trial (2008)

Hagenbeek, A., Gadeberg, O., Johnson, P., Pedersen, L.M., Walewski, J., Hellmann, A., ...

Ofatumumab is a unique monoclonal antibody that targets a distinct small loop epitope on the CD20 molecule. Preclinical data show that ofatumumab is active against B-cell lymphoma/chronic lymphocytic...

The second level trigger of the ATLAS experiment at CERN's LHC (2007)

Dos Anjos, A., Abolins, M., Armstrong, S., T. Baines, J., Barisonzi, M., P. Beck, H., ...

The ATLAS trigger reduces the rate of interesting events to be recorded for off-line analysis in three successive levels from 40 MHz to /spl sim/100 kHz, /spl sim/2 kHz and /spl sim/200 Hz. The high...

The second level trigger of the ATLAS experiment at CERN's LHC (2007)

Dos Anjos, A., Abolins, M., Armstrong, S., T. Baines, J., Barisonzi, M., P. Beck, H., ...

The ATLAS trigger reduces the rate of interesting events to be recorded for off-line analysis in three successive levels from 40 MHz to /spl sim/100 kHz, /spl sim/2 kHz and /spl sim/200 Hz. The high...

The second level trigger of the ATLAS experiment at CERN's LHC (2007)

Dos Anjos, A., Abolins, M., Armstrong, S., T. Baines, J., Barisonzi, M., P. Beck, H., ...

The ATLAS trigger reduces the rate of interesting events to be recorded for off-line analysis in three successive levels from 40 MHz to /spl sim/100 kHz, /spl sim/2 kHz and /spl sim/200 Hz. The high...

Deployment of the ATLAS High-Level Trigger (2007)

Dos Anjos, A., Armstrong, S., P. Beck, H., Bee, C.P., Biglietti, M., ...

The ATLAS combined test beam in the second half of 2004 saw the first deployment of the ATLAS High-Level Trigger (HLT). The next steps are deployment on the pre-series farms in the experimental area...

Deployment of the ATLAS High-Level Trigger (2007)

Dos Anjos, A., Armstrong, S., P. Beck, H., Bee, C.P., Biglietti, M., ...

The ATLAS combined test beam in the second half of 2004 saw the first deployment of the ATLAS High-Level Trigger (HLT). The next steps are deployment on the pre-series farms in the experimental area...

Deployment of the ATLAS High-Level Trigger (2007)

Dos Anjos, A., Armstrong, S., P. Beck, H., Bee, C.P., Biglietti, M., ...

The ATLAS combined test beam in the second half of 2004 saw the first deployment of the ATLAS High-Level Trigger (HLT). The next steps are deployment on the pre-series farms in the experimental area...

Fate of extrahepatic human stem and precursor cells after transplantation into mouse livers (2007)

Brulport, M., Schormann, W., Bauer, A., Hermes, M., Elsner, C., Hammersen, F.J., ...

In recent years, a large number of groups studied the fate of human stem cells in livers of immunodeficient animals. However, the interpretation of the results is quite controversial. We transplanted...

Testing on a Large Scale (2006)

Burckhart-Chromek, Doris, Abolins, M, Adragna, P, Albuquerque-Portes, M, Alexandrov, L, Amorim, A, ...

The ATLAS Data Acquisition (DAQ) and High Level Trigger (HLT) software system will be comprised initially of 2000 PC nodes which take part in the control, event readout, second level trigger and...

Testing on a Large Scale: Running the ATLAS Data Acquisition and High Level Trigger Software on 700 PC Nodes (2006)

Burckhart-Chromek, Doris, Abolins, M, Adragna, P, Alexandrov, L, Amorim, A, Armstrong, S, ...

The ATLAS Data Acquisition (DAQ) and High Level Trigger (HLT) software system will be comprised initially of 2000 PC nodes which take part in the control, event readout, second level trigger and...

The 2.1 angstrom crystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily (2006)

Wilmann, P. G., Battad, J., Petersen, J., Wilce, M. C. J., Dove, S., Devenish, R. J., ...

The green fluorescent protein (avGFP), its variants, and the closely related GFP-like proteins are characterized structurally by a cyclic tri-peptide chromophore located centrally within a conserved...

Competition between weeds and spring wheat for 15N-labelled nitrogen applied in pig slurry (2005)

Petersen, J

The changes in weed:crop competition as affected by the interaction of slurry distribution pattern with crop sowing pattern was examined, using the parameters dry matter (DM) production, nitrogen (N)...

The 2.1 angstrom crystal structure of the far-red fluorescent protein HcRed: Inherent conformational flexibility of the chromophore (2005)

Wilmann, PG, Petersen, J, Pettikiriarachchi, A, Buckle, AM, Smith, SC, Olsen, S, ...

We have determined the crystal structure of HcRed, a far-red fluorescent protein isolated from Heteractis crispa, to 2.1 resolution. HcRed was observed to form a dimer, in contrast to the monomeric...

The final design of the ATLAS Trigger/DAQ Readout-Buffer Input (ROBIN) Device (2004)

Kugel, A, Männer, R, Müller, M, Yu, M, Krause, E, Gorini, B, ...

The ATLAS readout subsystem (ROS) is the main interface between 1600 detector front-end readout links (ROL) and the high level (HLT) trigger farms. Its core device, the readout-buffer input (ROBIN),...

A Robin Prototype for a PCI-Bus based ATLAS Readout-System (2004)

Kugel, A, Gorini, B, Green, B, Joos, M, Kieft, G, Männer, R, ...

The Atlas RobIn Prototype is an FPGA and Processor based PC I device, which receives event data fragments on two HOLA SLink ports, buffers a nd delivers or deletes them on request. Thus it is one of...

The baseline dataflow system of the ATLAS trigger and DAQ (2003)

Vermeulen, J C, Abolins, M, Dos Anjos, A, Barisonzi, M, Beck, H P, Beretta, M, ...

In this paper the baseline design of the ATLAS High Level Trigger and Data Acquisition system with respect to the DataFlow aspects, as presented in the recently submitted ATLAS Trigger/DAQ/Controls...

Experience with multi-threaded C++ applications in the ATLAS DataFlow software (2003)

Gadomski, S, Abolins, M, Barisonzi, M, Beck, H P, Beretta, M, Blair, R, ...

The DataFlow is sub-system of the ATLAS data acquisition responsible for the reception, buffering and subsequent movement of partial and full event data to the higher level triggers: Level 2 and...

Experience with multi-threaded C++ applications in the ATLAS DataFlow software (2003)

Gadomski, S, Abolins, M, Barisonzi, M, Beck, H P, Beretta, M, Blair, R, ...

The DataFlow is sub-system of the ATLAS data acquisition responsible for the reception, buffering and subsequent movement of partial and full event data to the higher level triggers: Level 2 and...

Weed - spring barley competition for applied nitrogen in pig slurry (2003)

Petersen, J.

The experiments were carried out in the two spring barley fields of the organic six-course cattle:crop rotation at Foulumgaard,Denmark. The weed density was 300 and 1800 plants m-2 respectively. Pig...

Afgrøde og ukrudt konkurrerer om kvælstof (2002)

Petersen, J., Eskesen, K.

Udbringningsmetoden for gylle påvirker konkurrencen mellem afgrøde og ukrudt om tilført kvælstof. Ved bredspredning af gødningen kan ukrudtet optage en betydelig del af den tilførte gødning,...

VMEbus Libraries (2001)

M. Joos, J. Petersen, G. Unel

This note describes two libraries which allow application programs to execute VMEbus transfers efficiently, in either single cycle or block transfer mode. The first library provides functions to...

A user library and device driver for VMEbus and PCI based CORBO modules (2001)

M. Joos, J. Petersen

This note describes the design and the API of a library for VMEbus or PCI based CORBO modules as well as a Linux driver for the handling of interrupts generated by the PCI CORBO.

Report on the Phase 1 Integration (2001)

D. Francis, R. Jones, G. Lehmann, J. Petersen, D. Prigent, Z. Qian, ...

This note reports on the Phase 1 Integration week, carried out from Jan 22nd to Jan 26th 2001. It summarizes the steps taken to achieve a fully integrated TDAQ system as well as the difficulties met...

The Parameter Buffer in DAQ/EF Prototype-1 (2001)

D. Francis, M. Joos, J. Petersen

This note is a User's Manual for the Parameter Buffer Library. The concept of the Parameter Buffer is introduced and the main applications within DAQ/EF Prototype-1 are explained. The main features...

Markov- und Rainflow-Rekonstruktionen stochastischer Beanspruchungszeitfunktionen (2000)

Krüger, W., Scheutzow, M., Beste, A., Petersen, J.

Zur Datenreduktion gemessener stochastischer Beanspruchungszeitfunktionen werden Zählverfahren eingesetzt. Mit den dabei entstehenden Beanspruchungskollektiven werden rechnerische...

User Requirements for the Online Monitoring of the ATLAS DAQ/EF Prototype-1 (2000)

M. Caprini, D. Francis, R. Jones, S. Kolos, J. Petersen, L. Tremblet

This document contains the user requirements that will be used to design the Online Monitoring subsystem of the ATLAS DAQ and Event Filter Prototype-1 system. NoteNumber : 152 Version : 1.0 Date :...

VMEbus Libraries (2000)

M. Joos, J. Petersen, G. Unel

This note describes two libraries which allow application programs to execute VMEbus transfers efficiently, in either single cycle or block transfer mode. The first library provides functions to...

Allocation of contiguous memory in LynxOS and Linux: the UIO package (2000)

M. Joos, J. Petersen, G. Unel

The UIO library allows user level programs to allocate memory which is contiguous in physical memory. The package has been implemented under LynxOS and Linux and tested on a number of hardware...

The DAQ-Unit Message Passing Library (1999)

G. Crone, D. Francis, M. Joos, J. Petersen

This note describes the Message Passing Library developed for applications in the ReadOut Crate of the ATLAS DAQ prototype-1 project. The first part presents the main features of the library and...

DAQ-Unit performance summary (1999)

H. P. Beck, D. Francis, M. Joos, J. Petersen

This document summarises, within the context of the DataFlow system in ATLAS DAQ/EF prototype-1 [1], the performance of the DAQ-Unit. This document fulfils the ATLAS DAQ/ EF prototype-1 milestone of...

Software FIFOs for the IOM modules in the DAQ/EF-1 prototype (1999)

H. P. Beck, D. Francis, J. Petersen

FIFOs are generally used to pass information in a queueing way between two tasks in an application. This note describes the application programming interface which allows the use of a multitude of...

Intra and inter-IOM communications summary document (1999)

G. Crone, D. Francis, M. Joos, J. Petersen

This document summarises the work performed, within the context of the DAQ-Unit of the DataFlow system in ATLAS DAQ/EF prototype-1 [1] on intra and inter-Input/Output Module (IOM) message passing....

The Parameter Buffer API (1999)

D. Francis, M. Joos, J. Petersen

This note is a User's Manual for the Parameter Buffer Library. The concept of the Parameter Buffer is introduced and the main applications within the ReadOut Crate explained. The main features and...

The COTS Approach to the Read-Out Crate in ATLAS DAQ Prototype-1 (1998)

G. Ambrosini, H-p. Beck, S. Cetin, T. Conka, A. Fernandes, D. Francis, ...

A prototyping project has been undertaken by the ATLAS DAQ and Event Filter group. The aim is to design and implement a fully functional vertical slice of the ATLAS DAQ and Event Filter with maximum...

Event Building in the ATLAS DAQ/EF Prototype "-1" (1998)

G. Ambrosini, H. P. Beck, S. Cetin, T. Conka, D. Francis, F. Hogbe Nlend, ...

In the framework of the ATLAS DAQ/EF prototype "-1" a stand-alone smallscale event building prototype has been developed in order to study the issues of switch-based parallel event building as needed...

Authors: C. Bee, O. Boyle, D. Francis, L. Mapelli, R. McLaren, G. Mornacchi, J. Petersen (1998)

C. Bee, O. Boyle, D. Francis, L. Mapelli, R. Mclaren, G. Mornacchi, ...

This note presents the event format to be used in the ATLAS DAQ/EF prototype -1. It covers the format of data from the input to the Read-Out Crates from the Read-Out Drivers and up to the input of...

The LDAQ-DAQ unit/Event Builder interface API in ATLAS DAQ/EF prototype-1 (1998)

G. Ambrosini, D. Francis, G. Lehmann, M. Niculescu, J. Petersen

This note presents the Application Programmers Interface of the interface between the LDAQ and DAQ unit / Event Builder sub-systems of the ATLAS DAQ/EF prototype-1. NoteNumber : 088 Version : 1.2...

The main data flow in the Read-Out Crate of ATLAS DAQ prototype-1 (1998)

H. P. Beck, D. Francis, A. Lacourt, J. Petersen

This document is part of a suite of documents which together form the deliverable of the predesign phase of the Read-Out Crate (ROC) and the Sub-Farm Crate (SFC) in ATLAS DAQ prototype-1 [1]. In...

The Event Manager API in ATLAS DAQ/EF prototype-1 DAQ-unit (1998)

G. Crone, D. Francis, G. Mornacchi, J. Petersen

This note presents the Application Programmers Interface of the Event Manager in the DAQ-unit of the ATLAS DAQ/EF prototype-1. "A prince who is not himself wise cannot be wisely advised ... good...

Experience with fibre channel in the environment of the ATLAS DAQ protoype "-1" project (1998)

Ambrosini, G, Beck, H P, Francis, D, Joos, M, Lehmann, G, Mailov, A A, ...

Fibre Channel equipment has been evaluated in the environment of the ATLAS DAQ prototype "-1". Fibre Channel PCI and PMC cards have been tested on PwerPC-based VME processor boards running LynxOS and...

Error reporting in the I/O module libraries (1998)

H. P. Beck, D. Francis, M. Joos, J. Petersen, T. Wildish

This note describes a scheme for error reporting in the I/O module libraries. A convention for error codes is presented and the propagation of errors between library functions discussed. A set of...

An error classification and handling for the ATLAS DAQ/EF prototype-1 (1997)

An Error Classification, D. Francis, G. Mornacchi, K. Nurdan, J. Petersen, L. Tremblet, ...

This document aims at proposing an error classification and handling scheme within the ATLAS DAQ/EF prototype-1. This scheme is based on the identification of the sources of errors and the severities...

The Dataflow for the ATLAS DAQ/EF Prototype -1 (1997)

G. Ambrosini, H-p. Beck, D. Francis, M. Joos, G. Lehmann, A. Mailov, ...

This note introduces the dataflow for the ATLAS DAQ/EF prototype-1 and provides its high level design.

Inter and Intra-IOM Message Passing in the DAQ-unit (1997)

G. J. Crone, D. Francis, M. Joos, J. Petersen

NoteNumber : 063 Version : 1.0 Date : 04-11-97 Reference : http://atddoc.cern.ch/Atlas/Notes/063/Note063-1.html - 2 - DRAFT Document Change Record Table 1. Document Change Record. 1. Document Title:...

Event Monitoring in the ATLAS Prototype "DAQ-1 " (1997)

D. Francis, G. Mornacchi, J. Petersen, L. Tremblet

The current design and implementation of the event monitoring support in DAQ-1 are presented. Requirements, design choices and issues are highlighted. NoteNumber : 058 Version : 1.0 Date :...

The Sub-farm DAQ for the ATLAS DAQ Prototype-1 (1997)

D. Francis, G. Mornacchi, J. Petersen, L. Tremblet

We present a model for the sub-farm DAQ sub-system and its integration with the Event FIlter system.

Integration of the LDAQ and IOM components of the Read-out crate in the main data flow (1997)

D. Francis, M. Niculescu, C. Ottavi, J. Petersen, L. Tremblet

Integration concerns the issues necessary to provide the functionality of a read-out crate based on the LDAQ and IOM components. The completion of integration defines a Read-Out crate NoteNumber :...

Integration of VICbus, FDL, SCI and Ethernet in the CERN CASCADE data acquisition system (1995)

Petersen, J, Bizeau, C, Bogaerts, A, Burckhart, Doris, Divià, R, Ingebritsen, L, ...

Cascade is a multi-processor real-time data-acquisition system for HEP experiments developed at CERN by the ECP-DS group. Configurations supported today include VMEbus processors running OS-9 and...

Review and prospects of the CASCADE data acquisition system at CERN (1995)

Burckhart, Doris, Bizeau, C, Bozzoli, W, Divià, R, Lamouche, F, Gavino, J L, ...

CASCADE, a multi-processor real-time data-acquisition system for HEP experiments developed at CERN by the ECP-DS group, has now been in operation for one year. The current implementation supports...

Esprit Iii (1995)

B. J. Overeinder, J. Petersen, Parsytec Gmbh

This document reports on the design and implementation considerations of PVM/PARIX, homogeneous version 1.0. This version is for use with PARIX 1.2 only. Further, it contains information how to use...

Esprit Iii (1995)

B. J. Overeinder, J. Petersen, Parsytec Gmbh

This document reports on the design and implementation considerations of PVM/PARIX, homogeneous version 1.0. This version is for use with PARIX 1.2 only. Further, it contains information how to use...

Esprit Iii (1995)

B. J. Overeinder, J. Petersen, Parsytec Gmbh

This document reports on the design and implementation considerations of PVM/PARIX, homogeneous version 1.0. This version is for use with PARIX 1.2 only. Further, it contains information how to use...

Esprit Iii (1995)

B. J. Overeinder, J. Petersen, Parsytec Gmbh

This document reports on the design and implementation considerations of PVM/PARIX, homogeneous version 1.0. This version is for use with PARIX 1.2 only. Further, it contains information how to use...

Finalization report: homogeneous PVM/PARIX (1994)

Overeinder, B.J., Sloot, P.M.A., Petersen, J.

This document reports on the design and implementation considerations of PVM/PARIX, homogeneous version 1.0. This version is for use with PARIX 1.2 only. Further, it contains information how to use...