Late Roman Spain and its Cities (review) (2006)
The Catholic Historical Review - Volume 92, Number 2, April 2006
The RNA Ontology Consortium: An open invitation to the RNA community (2006)
Leontis, N B, Altman, R B, Berman, H M, Brenner, Steven E, Brown, J W, Engelke, D R, ...
The aim of the RNA Ontology Consortium (ROC) is to create an integrated conceptual framework - an RNA Ontology (RO) - with a common, dynamic, controlled, and structured vocabulary to describe and...
Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein.
Quinn, T P, Tweedy, N B, Williams, R W, Richardson, J S, Richardson, D C
How an amino acid sequence encodes the information necessary for a protein to adopt a unique tertiary structure remains unresolved. We are addressing this problem by designing "from scratch" protein...
The beta bulge: a common small unit of nonrepetitive protein structure.
Richardson, J S, Getzoff, E D, Richardson, D C
A beta bulge is a region between two consecutive beta-type hydrogen bonds which includes two residues (positions 1 and 2) on one strand opposite a single residue (position x) on the other strand....
Simultaneous comparison of three protein sequences.
Murata, M, Richardson, J S, Sussman, J L
Currently there are several computer algorithms available for aligning two biological sequences. When more than two sequences are to be aligned, however, pairwise comparisons using these methods...
Handedness of crossover connections in beta sheets.
In a crossover connection, the polypeptide chain leaves one end of a beta sheet, forms a loop of any length and any conformation, and reenters the same beta sheet from the opposite end. Of the 85...
Three dimensional structure of erabutoxin b neurotoxic protein: inhibitor of acetylcholine receptor.
Low, B W, Preston, H S, Sato, A, Rosen, L S, Searl, J E, Rudko, A D, ...
The three-dimensional structure of erabutoxin b, a neurotoxin in the venom of the sea snake Laticauda semifasciata, has been determined from a 2.75 A resolution electron density map. Erabutoxin b is...
Richardson, J S, Richardson, D C, Tweedy, N B, Gernert, K M, Quinn, T P, Hecht, M H, ...
Looking at proteins is an active process of interpretation and selection, emphasizing some features and deleting others. Multiple representations are needed, for such purposes as showing motions or...
Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein.
Quinn, T P, Tweedy, N B, Williams, R W, Richardson, J S, Richardson, D C
How an amino acid sequence encodes the information necessary for a protein to adopt a unique tertiary structure remains unresolved. We are addressing this problem by designing "from scratch" protein...
The beta bulge: a common small unit of nonrepetitive protein structure.
Richardson, J S, Getzoff, E D, Richardson, D C
A beta bulge is a region between two consecutive beta-type hydrogen bonds which includes two residues (positions 1 and 2) on one strand opposite a single residue (position x) on the other strand....
Simultaneous comparison of three protein sequences.
Murata, M, Richardson, J S, Sussman, J L
Currently there are several computer algorithms available for aligning two biological sequences. When more than two sequences are to be aligned, however, pairwise comparisons using these methods...
Handedness of crossover connections in beta sheets.
In a crossover connection, the polypeptide chain leaves one end of a beta sheet, forms a loop of any length and any conformation, and reenters the same beta sheet from the opposite end. Of the 85...
Three dimensional structure of erabutoxin b neurotoxic protein: inhibitor of acetylcholine receptor.
Low, B W, Preston, H S, Sato, A, Rosen, L S, Searl, J E, Rudko, A D, ...
The three-dimensional structure of erabutoxin b, a neurotoxin in the venom of the sea snake Laticauda semifasciata, has been determined from a 2.75 A resolution electron density map. Erabutoxin b is...
Richardson, J S, Richardson, D C, Tweedy, N B, Gernert, K M, Quinn, T P, Hecht, M H, ...
Looking at proteins is an active process of interpretation and selection, emphasizing some features and deleting others. Multiple representations are needed, for such purposes as showing motions or...
The kinemage: a tool for scientific communication.
Richardson, D. C., Richardson, J. S.
A "kinemage" (kinetic image) is a scientific illustration presented as an interactive computer display. Operations on the displayed kinemage respond within a fraction of a second: the entire image...
The tyrosine corner: a feature of most Greek key beta-barrel proteins.
Hemmingsen, J. M., Gernert, K. M., Richardson, J. S., Richardson, D. C.
The Tyr corner is a conformation in which a tyrosine (residue "Y") near the beginning or end of an antiparallel beta-strand makes an H bond from its side-chain OH group to the backbone NH and/or CO...
Surles, M. C., Richardson, J. S., Richardson, D. C., Brooks, F. P.
We describe a new paradigm for modeling proteins in interactive computer graphics systems--continual maintenance of a physically valid representation, combined with direct user control and...
The Alacoil: a very tight, antiparallel coiled-coil of helices.
Gernert, K. M., Surles, M. C., Labean, T. H., Richardson, J. S., Richardson, D. C.
The Alacoil is an antiparallel (rather than the usual parallel) coiled-coil of alpha-helices with Ala or another small residue in every seventh position, allowing a very close spacing of the helices...
Selegiline and the Treatment of Parkinson's Disease: How patients can benefit from drug therapy
Parkinson's disease involves the progressive degeneration of dopamine neurons in the extrapyramidal motor system. Levodopa, the metabolic precursor of dopamine, relieves symptoms but does not prevent...