Jade P. Vinson, Stacey Luoma, David Decaprio, Matthew D. Pearson, James E. Galagan
Computational gene prediction using generative models has reached a plateau, with several groups converging to a generalized hidden Markov model (GHMM) incorporating phylogenetic models of nucleotide...
Cauchy Transforms of Self-Similar Measures (2007)
John-Peter Lund, Robert S. Strichartz, Jade P. Vinson
this paper we will be concerned with selfsimilar measures ¯. These are solutions of selfsimilar identities ¯ =
Local Mininmality Results Related To The Bloch And Landau Constants (2007)
Albert Baernstein, Jade P. Vinson
This paper has two goals. One is to present some modest evidence in favor of the Ahlfors-Grunsky and Rademacher conjectures. The other is to highlight some methods which are used in the proofs of our...
Jerey C. Lagarias, Joel H. Spencer, Jade P. Vinson
Let u n be the number of ways to divide the unit square into dyadic rectangles of area 2 n
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi (2005)
Vinson, Jade P., Jaffe, David B., O'Neill, Keith, Karlsson, Elinor K., Stange-Thomann, Nicole, Anderson, Scott, ...
Whole-genome assembly is now used routinely to obtain high-quality draft sequence for the genomes of species with low levels of polymorphism. However, genome assembly remains extremely challenging...
Cauchy transforms of self-similar measures (1998)
Lund, John-Peter, Strichartz, Robert S., Vinson, Jade P.
The Cauchy transform of a measure in the plane, $$ F(z) = \frac{1}{2\pi i}\int_{\C} \frac{1}{z-w} \,d\mu(w)\hbox{,} $$ is a useful tool for numerical studies of the measure, since the measure of any...
Margulies, Elliott H., Vinson, Jade P., Miller, Webb, Jaffe, David B., Lindblad-Toh, Kerstin, Chang, Jean L., ...
With the recent completion of a high-quality sequence of the human genome, the challenge is now to understand the functional elements that it encodes. Comparative genomic analysis offers a powerful...
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
Vinson, Jade P., Jaffe, David B., O'Neill, Keith, Karlsson, Elinor K., Stange-Thomann, Nicole, Anderson, Scott, ...
Whole-genome assembly is now used routinely to obtain high-quality draft sequence for the genomes of species with low levels of polymorphism. However, genome assembly remains extremely challenging...
Margulies, Elliott H., Vinson, Jade P., Miller, Webb, Jaffe, David B., Lindblad-Toh, Kerstin, Chang, Jean L., ...
With the recent completion of a high-quality sequence of the human genome, the challenge is now to understand the functional elements that it encodes. Comparative genomic analysis offers a powerful...
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
Vinson, Jade P., Jaffe, David B., O'Neill, Keith, Karlsson, Elinor K., Stange-Thomann, Nicole, Anderson, Scott, ...
Whole-genome assembly is now used routinely to obtain high-quality draft sequence for the genomes of species with low levels of polymorphism. However, genome assembly remains extremely challenging...
Conrad: Gene prediction using conditional random fields
DeCaprio, David, Vinson, Jade P., Pearson, Matthew D., Montgomery, Philip, Doherty, Matthew, Galagan, James E.
We present Conrad, the first comparative gene predictor based on semi-Markov conditional random fields (SMCRFs). Unlike the best standalone gene predictors, which are based on generalized hidden...