Structural profiles of human miRNA families from pairwise clustering (2009)
Kaczkowski, Bogumil, Torarinsson, Elfar, Reiche, Kristin, Havgaard, Jakob Hull, Stadler, Peter F., Gorodkin, Jan
MicroRNAs (miRNAs) are a group of small, ∼21 nt long, riboreg-ulators inhibiting gene expression at a post-transcriptional level. Their most distinctive structural feature is the foldback hairpin...
Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo
Motivation: Searching for non-coding RNA (ncRNA) genes and structural RNA elements (eleRNA) are major challenges in gene finding today as these often are conserved in structure rather than in...
BIOINFORMATICS Pairwise local structural alignment of RNA sequences (2008)
Jakob Hull Havgaard, Rune Lyngsø
Motivation: Searching for non-coding RNA (ncRNA) genes and structural RNA elements (eleRNA) are major challenges in todays gene finding as these often are conserved in structure rather than in...
Structural profiles of miRNA families from pairwise clustering (2008)
Kaczkowski, Bogumil, Torarinsson, Elfar, Reiche, Kristin, Havgaard, Jakob Hull, Stadler, Peter F., Gorodkin, Jan
Bogumił Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin, ...
Structural profiles of human miRNA families from pairwise clustering
Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix (2007)
Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin
It has become clear that non-coding RNAs (ncRNA) play important roles in the cells, and emerging studies indicate that there might be a large number of unknown ncRNAs in mammalian genomes. There...
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% (2005)
Havgaard, Jakob Hull, Lyngsø, Rune B., Stormo, Gary D., Gorodkin, Jan
Motivation: Searching for non-coding RNA (ncRNA) genes and structural RNA elements (eleRNA) are major challenges in gene finding today as these often are conserved in structure rather than in...
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% (2005)
Havgaard, Jakob Hull, Lyngsø, Rune, Stormo, Gary D., Gorodkin, Jan
Motivation: Searching for non-coding RNA (ncRNA) genes and structural RNA elements (eleRNA) are major challenges in todays gene finding as these often are conserved in structure rather than in...