James Taylor

Validating a DEA-based Menu Analysis Model using Structural Equation Modeling (2009)

Reynolds, Dennis, Taylor, James

Traditional menu management and analysis models share the common and irremediable shortcoming of variable interdependency, in which the central intersection between vectors in a matrix is dictated by...

Transcription regulation of restriction-modification system Esp1396I (2009)

Bogdanova, Ekaterina, Zakharova, Marina, Streeter, Simon, Taylor, James, Heyduk, Tomasz, Kneale, Geoff, ...

The convergently transcribed restriction (R) and methylase (M) genes of the Restriction–Modification system Esp1396I are tightly regulated by a controller (C) protein that forms part of the CR...

Functional connectivity reveals inefficient working memory systems in post-traumatic stress disorder (2009)

Shaw, Marnie E., Moores, Kathryn, Clark, Richard C., McFarlane, Alexander Cowell, Strother, Steven C., Bryant, Richard A., ...

Marnie E. Shawa, Kathryn A. Moores, Richard C. Clark, Alexander C. McFarlane, Stephen C. Strother, Richard A. Bryant, Greg C. Brown, James D. Taylor

Functional connectivity reveals inefficient working memory systems in post-traumatic stress disorder (2009)

Shaw, Marnie E., Moores, Kathryn, Clark, Richard C., McFarlane, Alexander Cowell, Strother, Steven C., Bryant, Richard A., ...

Marnie E. Shawa, Kathryn A. Moores, Richard C. Clark, Alexander C. McFarlane, Stephen C. Strother, Richard A. Bryant, Greg C. Brown, James D. Taylor

Windshield splatter analysis with the Galaxy metagenomic pipeline (2009)

Kosakovsky Pond, Sergei, Wadhawan, Samir, Chiaromonte, Francesca, Ananda, Guruprasad, Chung, Wen-Yu, Taylor, James, ...

How many species inhabit our immediate surroundings? A straightforward collection technique suitable for answering this question is known to anyone who has ever driven a car at highway speeds. The...

First catalog of strong lens candidates in the COSMOS field (2008)

Faure, Cecile, Kneib, Jean-Paul, Covone, Giovanni, Tasca, Lidia, Leauthaud, Alexie, Capak, Peter, ...

We present the first catalog of 67 strong galaxy-galaxy lens candidates discovered in the 1.64 deg^2 Hubble Space Telescope COSMOS survey. Twenty of these systems display multiple images or strongly...

Genome analysis of the platypus reveals unique signatures of evolution (2008)

Warren, Wesley C., Hillier, LaDeana W., Marshall Graves, Jennifer A., Birney, Ewan, Ponting, Chris P., Grützner, Frank, ...

We present a draft genome sequence of the platypus, Ornithorhynchus anatinus. This monotreme exhibits a fascinating combination of reptilian and mammalian characters. For example, platypuses have a...

First catalog of strong lens candidates in the COSMOS field (2008)

Faure, Cecile, Kneib, Jean-Paul, Covone, Giovanni, Tasca, Lidia, Leauthaud, Alexie, Capak, Peter, ...

We present the first catalog of 67 strong galaxy-galaxy lens candidates discovered in the 1.64 deg2 Hubble Space Telescope COSMOS survey. Twenty of these systems display multiple images or strongly...

ROBUST PIP CONTROL OF MULTIVARIABLE STOCHASTIC SYSTEMS (2007)

James Taylor, Arun Chotai, Peter Young

benchmark. This paper discusses the development of robust versions of multivariable Non-Minimal State Space (NMSS) design procedures, for Proportional-Integral-Plus (PIP) control systems. The...

FORECASTING, SIMULATION AND PIP CONTROL OF INTERURBAN TRAFFIC NETWORKS (2007)

James Taylor, Peter Young, Arun Chotai

co-ordinated traffic control; dynamic harmonic regression model; non-linear simulation. This paper discusses a number of research areas concerned with dynamic traffic management, including...

Rigorous Hybrid Systems Simulation with Continuous-time Discontinuities and Discrete-time Agents (2007)

James Taylor

: Earlier research in the modeling and simulation of hybrid systems led to the development of a general hybrid systems modeling language (hsml) that has been described elsewhere. In more recent work,...

Technological Change and the Governance of Joint-Stock Enterprise in the Early Nineteenth Century: The Case of Scottish Coastal Shipping. (2007)

Freeman, Mark, Pearson, Robin, Taylor, James

Recent studies of the innovation process have viewed it as the outcome of organizational dynamics rather than as the product of technological developments exogenous to the governance of firms. We...

Company Fraud in Victorian Britain: The Royal British Bank Scandal of 1856 (2007)

Taylor, James

Earlier reports of the death of the moral economy in nineteenth-century Britain have been greatly exaggerated. The idea that Victorian social and economic life was shaped by the rigid precepts of...

A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)

Blankenberg, Daniel, Taylor, James, Schenck, Ian, He, Jianbin, Zhang, Yi, Ghent, Matthew, ...

The standardization and sharing of data and tools are the biggest challenges of large collaborative projects such as the Encyclopedia of DNA Elements (ENCODE). Here we describe a compact Web...

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome (2007)

Margulies, Elliott H., Cooper, Gregory M., Asimenos, George, Thomas, Daryl J., Dewey, Colin N., Siepel, Adam, ...

A key component of the ongoing ENCODE project involves rigorous comparative sequence analyses for the initially targeted 1% of the human genome. Here, we present orthologous sequence generation,...

Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data (2007)

King, David C., Taylor, James, Zhang, Ying, Cheng, Yong, Lawson, Heather A., Martin, Joel, ...

Identification of functional genomic regions using interspecies comparison will be most effective when the full span of relationships between genomic function and evolutionary constraint are...

'Company fraud in Victorian Britain: the Royal British Bank scandal of 1856'. (2007)

Taylor, James

Earlier reports of the death of the moral economy in nineteenth-century Britain have been greatly exaggerated. The idea that Victorian social and economic life was shaped by the rigid precepts of...

'Different and Better?' Scottish Joint-Stock Companies and the Law, c. 1720-1845 (2007)

Freeman, Mark, Pearson, Robin, Taylor, James

This paper examines the legal status of joint-stock companies in Scotland in the period between the ‘Bubble Act’ of 1720 and the reforms of company law in Britain in the mid-1840s. Historians...

'Different and better?' Scottish Joint-Stock Companies and the Law, c. 1720-1845. (2007)

Freeman, Mark, Pearson, Robin, Taylor, James

This paper examines the legal status of joint-stock companies in Scotland in the period between the `Bubble Act' of 1720 and the reforms of company law in Britain in the mid-1840s. Historians have...

Dark matter maps reveal cosmic scaffolding (2007)

Massey, Richard, Rhodes, Jason, Ellis, Richard, Scoville, Nick, Leauthaud, Alexie, Finoguenov, Alexis, ...

Ordinary baryonic particles (such as protons and neutrons) account for only one-sixth of the total matter in the Universe. The remainder is a mysterious "dark matter" component, which does not...

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser (2007)

Miller, Webb, Rosenbloom, Kate, Hardison, Ross C., Hou, Minmei, Taylor, James, Raney, Brian, ...

This article describes a set of alignments of 28 vertebrate genome sequences that is provided by the UCSC Genome Browser. The alignments can be viewed on the Human Genome Browser (March 2006...

'A Doe in the City': Women Shareholders in Eighteenth- and Early Nineteenth-Century Britain. (2006)

Freeman, Mark, Pearson, Robin, Taylor, James

This paper investigates the role of women as shareholders in joint stock companies, and how far they can be characterised as active investors. It is based on a large database of company...

Learning signals in genomic sequence alignments for identification of functional elements [electronic resource] / (2006)

Taylor, James.

The full text of the dissertation is available as a Adobe Acrobat .pdf file (67 p.) ; Adobe Acrobat Reader required to view the file.

Topological Factors Derived From Bohmian Mechanics (2006)

Detlef Dürr, Sheldon Goldstein, James Taylor, Roderich Tumulka, Nino Zanghì

We derive for Bohmian mechanics topological factors for quantum systems with a multiply-connected configuration space Q. These include nonabelian factors corresponding to what we call...

Strong and Weak Male Mutation Bias at Different Sites in the Primate Genomes: Insights from the Human-Chimpanzee Comparison (2006)

Taylor, James, Tyekucheva, Svitlana, Zody, Michael, Chiaromonte, Francesca, Makova, Kateryna D.

Male mutation bias is a higher mutation rate in males than in females thought to result from the greater number of germ line cell divisions in males. If errors in DNA replication cause most...

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements (2006)

Taylor, James, Tyekucheva, Svitlana, King, David C., Hardison, Ross C., Miller, Webb, Chiaromonte, Francesca

Genomic sequence signals—such as base composition, presence of particular motifs, or evolutionary constraint—have been used effectively to identify functional elements. However, approaches based...

Experimental validation of predicted mammalian erythroid cis-regulatory modules (2006)

Wang, Hao, Zhang, Ying, Cheng, Yong, Zhou, Yuepin, King, David C., Taylor, James, ...

Multiple alignments of genome sequences are helpful guides to functional analysis, but predicting cis-regulatory modules (CRMs) accurately from such alignments remains an elusive goal. We predict...

Experimental validation of predicted mammalian erythroid cis-regulatory modules (2006)

Wang, Hao, Zhang, Ying, Cheng, Yong, Zhou, Yuepin, King, David C., Taylor, James, ...

Multiple alignments of genome sequences are helpful guides to functional analysis, but predicting cis-regulatory modules (CRMs) accurately from such alignments remains an elusive goal. We predict...

ESPERR: Learning strong and weak signals in genomic sequence alignments to identify functional elements (2006)

Taylor, James, Tyekucheva, Svitlana, King, David C., Hardison, Ross C., Miller, Webb, Chiaromonte, Francesca

Genomic sequence signals—such as base composition, presence of particular motifs, or evolutionary constraint—have been used effectively to identify functional elements. However, approaches based...

Causes of pattern in plant communities where environmental change is rapid and species longevity is short (2006)

Cousens, Roger D., Dale, Mark R. T., Taylor, James, Law, Richard, Moerkerk, Michael, Kembel, Steven W.

Questions: To what extent can spatial structure and its causes be determined in a highly disturbed environment? What are the main determinants of pattern and are these species-specific? How much do...

Characterization of surface roughness effects on pressure drop in single-phase flow in minchannels (2005)

Kandlikar, Satish, Schmitt, Derek, Carrano, Andres, Taylor, James

Roughness features on the walls of a channel wall affect the pressure drop of a fluid flowing through that channel. This roughness effect can be described by (i) flow area constriction and (ii)...

Characterization of the effect of surface roughness and texture on fluid flow - past, present, and future (2005)

Taylor, James, Carrano, Andres, Kandlikar, Satish

Proceedings of the third international conference on microchannels and minichannels, June 13-15, 2005. The complete proceedings can be found at www.asme.org .

Commercial fraud and public men in Victorian Britain. (2005)

Taylor, James

This article is a contribution to the growing literature on business morality in Victorian Britain. Using the Royal British Bank fraud of 1856 as a case study, it examines the effects association...

Predicting prolonged dysphagia in acute stroke: the Royal Adelaide Prognostic Index for Dysphagic Stroke (RAPIDS) (2005)

Broadley, Simon, Cheek, Alison, Salonikis, Suzie, Whitham, Emma, Chong, Victoria, Cardone, David, ...

Dysphagia is common after stroke and is associated with increased morbidity and mortality. Predicting those who are likely to have significant prolonged dysphagia is not possible at present. This...

Predicting prolonged dysphagia in acute stroke: the Royal Adelaide Prognostic Index for Dysphagic Stroke (RAPIDS) (2005)

Broadley, Simon, Cheek, Alison, Salonikis, Suzie, Whitham, Emma, Chong, Victoria, Cardone, David, ...

Dysphagia is common after stroke and is associated with increased morbidity and mortality. Predicting those who are likely to have significant prolonged dysphagia is not possible at present. This...

Are all particles real (2005)

Sheldon Goldstein, James Taylor, Roderich Tumulka, Nino Zanghì

In Bohmian mechanics elementary particles exist objectively, as point particles moving according to a law determined by a wavefunction. In this context, questions as to whether the particles of a...

Predicting prolonged dysphagia in acute stroke: the Royal Adelaide Prognostic Index for Dysphagic Stroke (RAPIDS) (2005)

Broadley, Simon, Cheek, Alison, Salonikis, Suzie, Whitham, Emma, Chong, Victoria, Cardone, David, ...

Dysphagia is common after stroke and is associated with increased morbidity and mortality. Predicting those who are likely to have significant prolonged dysphagia is not possible at present. This...

The six faces model: Technology management in the effective implementation of change (2005)

Kearns, Molly, Taylor, James, Hull, Clyde

Electronic version of an article published as International Journal of Innovation and Technology Management, Volume 2, Issue 1, 2005, 77-100, DOI:10.1142/S0219877005000381, copyright World Scientific...

Strong and Weak Male Mutation Bias at Different Sites in the Primate Genomes: Insights from the Human-Chimpanzee Comparison (2005)

Taylor, James, Tyekucheva, Svitlana, Zody, Michael, Chiaromonte, Francesca, Makova, Kateryna D.

Male mutation bias is a higher mutation rate in males than in females thought to result from the greater number of germline cell divisions in males. If errors in DNA replication cause most mutations,...

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences (2005)

King, David C., Taylor, James, Elnitski, Laura, Chiaromonte, Francesca, Miller, Webb, Hardison, Ross C.

Techniques of comparative genomics are being used to identify candidate functional DNA sequences, and objective evaluations are needed to assess their effectiveness. Different analytical methods...

Galaxy: A platform for interactive large-scale genome analysis (2005)

Giardine, Belinda, Riemer, Cathy, Hardison, Ross C., Burhans, Richard, Elnitski, Laura, Shah, Prachi, ...

Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the...

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences (2005)

King, David C., Taylor, James, Elnitski, Laura, Chiaromonte, Francesca, Miller, Webb, Hardison, Ross C.

Techniques of comparative genomics are being used to identify candidate functional DNA sequences, and objective evaluations are needed to assess their effectiveness. Different analytical methods...

Strong and Weak Male Mutation Bias at Different Sites in the Primate Genomes: Insights from the Human-Chimpanzee Comparison (2005)

Taylor, James, Tyekucheva, Svitlana, Zody, Michael, Chiaromonte, Francesca, Makova, Kateryna D.

Male mutation bias is a higher mutation rate in males than in females thought to result from the greater number of germline cell divisions in males. If errors in DNA replication cause most mutations,...

Are All Particles Identical? (2004)

Sheldon Goldstein, James Taylor, Roderich Tumulka, Nino Zanghì

We consider the possibility that all particles in the world are fundamentally identical, i.e., belong to the same species. Different masses, charges, spins, flavors, or colors then merely correspond...

Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat (2004)

Kolbe, Diana, Taylor, James, Elnitski, Laura, Eswara, Pallavi, Li, Jia, Miller, Webb, ...

We generalize the computation of the Regulatory Potential (RP) score from two-way alignments of human and mouse to three-way alignments of human, mouse, and rat. This requires overcoming technical...

Ergonomic interventions for the furniture manufacturing industry. Part I -- Lift assist devices (2002)

Mirka, Gary, Smith, Christy, Shivers, Carrie, Taylor, James

RIT community members may access full-text via RIT Libraries licensed databases: http://library.rit.edu/databases/

Ergonomic interventions for the furniture manufacturing industry. Part II -- Handtools (2002)

Mirka, Gary, Shivers, Carrie, Smith, Christy, Taylor, James

RIT community members may access full-text via RIT Libraries licensed databases: http://library.rit.edu/databases/

Private property, public interest, and the role of the state in nineteenth-century Britain: the case of the lighthouses. (2001)

Taylor, James

Until 1836, many of England's lighthouses were privately owned. The owners levied tolls on all merchant shipping which made use of the lights, and in many cases grew rich from the proceeds. After...

Contoured edge slice generation in rapid prototyping via 5-axis machining (2001)

Taylor, James, Cormier, Denis, Joshi, Sandesh, Venkataraman, Vivek

RIT community members may access full-text via RIT Libraries licensed databases: http://library.rit.edu/databases/

A Process for solvent welded rapid prototype tooling (2001)

Cormier, Denis, Taylor, James

RIT community members may access full-text via RIT Libraries licensed databases: http://library.rit.edu/databases/

A Process For Solvent Welded Rapid Prototype Tooling (2000)

Denis Cormier, James Taylor

: Rapid prototyping is widely seen as an effective tool for compressing time to market for new products. The typical process followed by industrial and mechanical design groups is to model a new...

Data-based mechanistic modelling and control of mass and energy transfer in agricultural buildings. (1999)

Price, Laura, Young, Peter C., Berckmans, Daniel, Janssens, Karl, Taylor, James

This paper discusses the Data-Based Mechanistic (DBM) approach to modelling the micro-climate in agricultural buildings. Here, the imperfect mixing processes that dominate the system behaviour during...

The Multifractal Structure Of Super-Brownian Motion (1998)

Edwin A. Perkins, James Taylor

this paper will follow for general fl 0 once they are established for fl 0 = 4, a value which arises naturally from Le Gall's representation of X in terms of a path-valued process. Henceforth fl...

SAGITTAL AND HORIZONTAL PLANE MOVEMENT OF THE HUMAN LUMBAR VERTEBRAL COLUMN IN CADAVERS AND IN THE LIVING (1980)

TAYLOR, JAMES, TWOMEY, LANCE

The ranges of sagittal and horizontal plane movements of the human lumbar vertebral column have been measured in 204 cadavers and 437 living subjects of both sexes. The cadaveric measurements were...

Perception and empirical knowledge. (1942)

Taylor, James.

Thesis--University of California at Los Angeles.

Translation from the French of the book "Tactics of motor transportation and traffic circulation in campaign, volume II," by Major J. Delest, and a comparison of the French and American method of moving a division by motor transportation. (1933)

Taylor, James

This paper is a comparison of the French and American method of moving a division by motor transport from four selected outstanding differences worthy of analysis in order of importance: (1) Traffic;...

Transcription regulation of restriction-modification system Esp1396I

Bogdanova, Ekaterina, Zakharova, Marina, Streeter, Simon, Taylor, James, Heyduk, Tomasz, Kneale, Geoff, ...

The convergently transcribed restriction (R) and methylase (M) genes of the Restriction–Modification system Esp1396I are tightly regulated by a controller (C) protein that forms part of the CR...