From Computational Biophysics to Systems Biology (CBSB08), (2009)
Ch. Pospiech, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors, ...
Proceedings of the NIC Workshop 2008,
From Computational Biophysics to Systems Biology (CBSB08), (2009)
S. M. Law, M. Feig, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
R. Elber, A. West, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
From Computational Biophysics to Systems Biology (CBSB08), (2009)
M. Wojciechowski, M. Cieplak, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Do Amyloidogenic Regions Intersect with Folding Nuclei of Native Structure? (2009)
O. V. Galzitskaya, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors, ...
Proceedings of the NIC Workshop 2008,
Th. Margraf, A. Torda, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Reduced Molecular Dynamics (2009)
M. Szypowski, A. Górecki, J. Trylska, Jan H. Meinke, Ipan Mohanty, ...
published in
G. Schenk, A. Torda, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
P. An, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
Jumping Gene Machine, J. Navarra-madsen, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Structure of Protein-Protein Complexes (2009)
I. Meliciani, S. M. Gopal, W. Wenzel, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
Thiocyanate Hydrolase with Non-Corrinoid Co(III) in Active Site (2009)
Metaloenzyme Thiocyanate Hydrolase, L. Peplowski, W. Nowak, Jan H. Meinke, Ipan Mohanty, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
J. Krüger, W. B. Fischer, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Ö. Kartal, O. Ebenhöh, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
D. P. Geerke, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
http://www.fz-juelich.de/nic-series/volume40 Protein-Protein Interaction Prediction (2009)
F. Fink, St. Ederer, W. Gronwald, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
by Cutting-Edge Technologies (2009)
S. A. Kumar, M. Petersen, C. J. Cardin, Y. Gan, ...
published in
Site-directed Mutagenesis, J. Lenz, Th. Lemcke, P. Heisig, A. Torda, ...
published in
Contributions to the Hydration Free Energies of Amino Acids (2009)
G. König, St. Boresch, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Structure Improvement by X-Ray (2009)
K. Brunner, W. Gronwald, A. Fischer, J. Trenner, H. R. Kalbitzer, ...
published in
Amyloid-β Peptide Solutions by a Designed β-Sheet Breaker (2009)
L. Nagel-steger, B. Demeler, K. Hochdörffer, Th. Schrader, D. Willbold, ...
published in
Between Protein Rigidity and Thermostability (2009)
S. Radestock, H. Gohlke, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
I. Liepina, C. Czaplewski, V. Ose, R. Danne, G. Duburs, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
Amyloidogenic Peptides, G. Singh, I. Brovchenko, R. Winter, Jan H. Meinke, ...
published in
Designing an Automatic Pipeline for Protein Structure Prediction (2009)
S. Kmiecik, M. Jamroz, A. Zwolinska, P. Gniewek, A. Kolinski, ...
published in
S. Furlan, G. La Penna, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
From Computational Biophysics to Systems Biology (CBSB08), (2009)
M. Geller, Ł. Walewski, M. Długosz, B. Lesyng, Jan H. Meinke, ...
published in
Bilayer and in a Micelle (2009)
In A Micelle, A. Choutko, A. Glättli, W. Van Gunsteren, ...
Proceedings of the NIC Workshop 2008,
Beta-amyloid Peptides, N. S. Lam, M. Kouza, H. Zung, M. S. Li, ...
published in
Y. Chebaro, Ph. Derreumaux, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Molecular Dynamics Simulations (2009)
R. A. Böckmann, S. Leis, S. Kakorin, E. Neumann, ...
published in
Calculation of Coulomb Potentials (2009)
A. Schiller, G. Sutmann, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
K. Kubiak, P. Mulheran, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Global Motions in the Nucleosome Explored Using a Coarse-Grained Model (2009)
K. Voltz, J. Trylska, V. Tozzini, V. Kurkal-siebert, J. C. Smith, J. Langowski, ...
published in
M. Długosz, J. Trylska, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Single Molecule FRET Study of the Conformational Energy Landscape of a Transfer RNA (2009)
A. Yu. Kobitski, M. Hengesbach, M. Helm, G. U. Nienhaus, Jan H. Meinke, ...
published in
S. Fulle, H. Gohlke, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
J. Neumann, J. Morfill, K. E. Gottschalk, Jan H. Meinke, Ipan Mohanty, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
J. Teyra, M. Paszkowski-rogacz, G. Anders, M. T. Pisabarro, Jan H. Meinke, ...
published in
Free Energy Study of Ion Permeation through Gramicidin (2009)
Through Gramicidin, R. A. Böckmann, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
Simulating Biomolecules in Cellular Environments (2009)
M. Feig, S. Tanizaki, M. Sayadi, J. W. Clifford, B. D. Connelly, S. Mukherjee, ...
published in
Peptide in Explicit Solvent and at an Interface (2009)
V. Knecht, R. Lipowsky, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
I. Antes, Ch. Hartmann, Th. Lengauer, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
Modelling of Possible Binding Modes of Caffeic Acid Derivatives to JAK3 Kinase (2009)
J. Kuska, P. Setny, B. Lesyng, Jan H. Meinke, Ipan Mohanty, ...
published in
Properties of Human Islet Amyloid Polypeptide in Water (2009)
M. N. Andrews, I. Brovchenko, R. Winter, Jan H. Meinke, ...
Proceedings of the NIC Workshop 2008,
From Computational Biophysics to Systems Biology (CBSB08), (2009)
V. Namasivayam, R. Günther, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
A. Schug, J. Onuchic, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Different Environments via Replica Exchange Molecular Dynamics Simulations (2009)
Ö. Engin, M. Sayar, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
T. Strunk, S. M. Gopal, K. Klenin, W. Wenzel, Jan H. Meinke, ...
published in
K. Hamacher, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors, ...
Proceedings of the NIC Workshop 2008,
Oligopeptides by Replica Exchange MD Simulations with (2009)
P. Tamamis, L. Adler-abramovich, E. Gazit, G. Archontis, Jan H. Meinke, ...
published in
and Tu Studied with All-Atom and Coarse-Grained Molecular Dynamics (2009)
K. Kulczycka, M. Długosz, J. Trylska, Jan H. Meinke, Ipan Mohanty, ...
published in
R. P. Bahadur, M. Zacharias, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
L. Zheng, H. Li, W. Yang, Jan H. Meinke, Ipan Mohanty, ...
published in
Drosophila Melanogaster Hemoglobin (2009)
L. Dams, S. Orlowski, W. Nowak, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
T. R. Einert, P. Näger, H. Orl, R. R. Netz, Jan H. Meinke, ...
c ○ 2008 by John von Neumann Institute for Computing Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not...
From Isotope Labeling Patterns to Metabolic Flux Rates (2009)
K. Nöh, M. Weitzel, W. Wiechert, Jan H. Meinke, Ipan Mohanty, ...
published in
Transduction Mechanism in the Na + /K +-ATPase (2009)
Ch. Weidemüller, K. Hauser, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Ph. Derreumaux, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors
Proceedings of the NIC Workshop 2008,
C. Camilloni, A. De Simone, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Folds Overnight by 100 Processors (2009)
K. V. Klenin, W. Wenzel, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Protein Simulations on Massively Parallel Computers (2009)
J. H. Meinke, S. Mohanty, W. Nadler, Th. Neuhaus, O. Zimmermann, ...
published in
Predicting Protein Interactions from Functional Specificity (2009)
K. A. Feenstra, G. Bastianelli, J. Heringa, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
F. Jamitzky, J. Gong, T. Wei, W. M. Heckl, S. C. Rössle, ...
published in
The Inherent Stability of Collagen (2009)
V. K. Pálfi, A. Perczel, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Structure-Based Approach (2009)
J. Lenz, Th. Margraf, Th. Lemcke, A. Torda, Jan H. Meinke, ...
Proceedings of the NIC Workshop 2008,
http://www.fz-juelich.de/nic-series/volume40 A Non-Native Helix Extension Channels Folding (2009)
S. Mohanty, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Simulation of RNA Folding on the Simple Cubic Lattice (2009)
S. Hayryan, K. G. Sargsyan, Jan H. Meinke, Ipan Mohanty, ...
published in
From Computational Biophysics to Systems Biology (CBSB08), (2009)
M. Hoefling, K. E. Gottschalk, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Y. Thielmann, O. H. Weiergräber, J. Mohrlüder, B. W. Koenig, R. Hartmann, Th. Stangler, ...
published in
J. Berryman, S. Radford, S. Harris, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
D. Kokh, W. Wenzel, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Scattering Data, Ch. Meesters, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
C α Chemical Shifts and NOE Distance Constraints (2009)
J. A. Vila, H. A. Scheraga, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
B. Griepernau, Ch. Hanke, L. Santen, R. A. Böckmann, Jan H. Meinke, ...
published in
H. Sánchez, B. Fischer, H. Merlitz, W. Wenzel, Jan H. Meinke, ...
published in
C. M. Becker, A. Benedix, A. Caflisch, R. A. Böckmann, ...
published in
J. Hritz, Ch. Oostenbrink, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Strategies to Overcome the Induced Fit Effects in Molecular Docking (2009)
I. Kufareva, R. Abagyan, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Multiscale Modeling Cardiac Contraction: Bridging Proteins to Cells to Whole Heart (2009)
J. J. Rice, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors, ...
Proceedings of the NIC Workshop 2008,
Sequence Specific DNA Recognition by EcoRV (2009)
M. Zahran, P. Imhof, J. C. Smith, Jan H. Meinke, Ipan Mohanty, ...
published in
S. Samsonov, J. Teyra, M. T. Pisabarro, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
of the Oxygen Evolving Mechanism Located in the D1 Subunit of Photosystem II (2009)
G. M. Ullmann, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
http://www.fz-juelich.de/nic-series/volume40 Short Membrane Proteins from Viruses: (2009)
G. Patargias, H. Martay, J. Krüger, ...
published in
Active Site of the Anthrax Edema Factor (2009)
Anthrax Edema Factor, L. Martínez, Th. Malliavin, M. Nilges, A. Blondel, ...
Proceedings of the NIC Workshop 2008,
Modeling the Free Energy of Polypeptides in Different Environments (2009)
G. La Penna, S. Furlan, A. Perico, Jan H. Meinke, Ipan Mohanty, ...
published in
Heterogeneity with Analytical Ultracentrifugation Experiments (2009)
B. Demeler, E. Brookes, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
published in
Improved Hydrogen Bond Potentials to Assess in Silico Protein Folding (2009)
M. G. Wolf, J. Vreede, P. G. Bolhuis, Jan H. Meinke, ...
published in
H. Behringer, F. Schmid, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Simplified Approaches to Complex Biological Systems (2009)
N. V. Dokholyan, Jan H. Meinke, Ipan Mohanty, Walter Nadler, Olav Zimmermann (editors, ...
Proceedings of the NIC Workshop 2008,
Oligomers and Amyloid Protofibrils, the Early Stage of Development of the Alzheimer’s Disease (2009)
Amyloid Oligomers, Amyloid Protofibrils, F. Despa, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
Influenza Virus H5N1: Why H5 is Better Cleaved by Furin (2009)
P. Decha, P. Wolschann, S. Hannongbua, Jan H. Meinke, Ipan Mohanty, ...
published in
Amyloid Beta Peptides, S. Hayat, V. Helms, Jan H. Meinke, Ipan Mohanty, ...
Proceedings of the NIC Workshop 2008,
J. A. Kalinowski, B. Lesyng, Jan H. Meinke, Ipan Mohanty, Walter Nadler, ...
Proceedings of the NIC Workshop 2008,
Protein simulations combining an all-atom force field with a Go term (2009)
Meinke, Jan H, Hansmann, Ulrich H E
Using a variant of parallel tempering, we study the changes in sampling within a simulation when the all-atom model is coupled to a Go-like potential. We find that the native structure is not the...
Different Types of Protein Folding Identified with a Coarse-Grained Heteropolymer Model (2009)
St. Schnabel, M. Bachmann, W. Janke, Jan H. Meinke, Ipan Mohanty, ...
Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and...
Freezing and Collapse of Flexible Polymers (2009)
Th. Vogel, M. Bachmann, W. Janke, Jan H. Meinke, Ipan Mohanty, ...
Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and...
From Computational Biology to Systems Biology (CBSB08) (2009)
Meinke, Jan H., Mohanty, Sandipan, Nadler, Walter, Zimmermann, Olav
Parallelization of ECEPP/3 in SMMP (2008)
J. H. Meinke, Jan Meinke, Ipan Mohanty, Olav Zimmermann (editors, ...
Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and...
Stabilizing regions in membrane proteins (2008)
F. Dressel, A. Marsico, A. Tuukkanen, R. Winnenburg, M. Schroeder, D. Labudde, ...
Proceedings of the NIC Workshop 2008,
Direct Visualization of Dislocation Dynamics in Grain Boundary Scars (2005)
Lipowsky, Peter, Bowick, Mark J., Meinke, Jan H., Nelson, David R., Bausch, Andreas R.
Mesoscale objects with unusual structural features may serve as the analogues of atoms in the design of larger-scale materials with novel optical, electronic or mechanical behaviour. In this paper we...
Linking physics and algorithms in the random-field Ising model (2005)
Meinke, Jan H., Middleton, A. Alan
The energy landscape for the random-field Ising model (RFIM) is complex, yet algorithms such as the push-relabel algorithm exist for computing the exact ground state of an RFIM sample in time...
Exploring optimization for the random-field Ising model (2005)
Hambrick, D. Clay, Meinke, Jan H., Middleton, A. Alan
The push-relabel algorithm can be used to calculate rapidly the exact ground states for a given sample with a random-field Ising model (RFIM) Hamiltonian. Although the algorithm is guaranteed to...