O'Rourke, Jamie A, Nelson, Rex T, Grant, David, Schmutz, Jeremy, Grimwood, Jane, Cannon, Steven, ...
Abstract Background Soybeans grown in the upper Midwestern United States often suffer from iron deficiency chlorosis, which results in yield loss at the end of the season. To better understand the...
Worden, Alexandra Z., Lee, Jea-Hyeok, Mock, Thomas, Rouzé, Pierre, Simmons, Melinda P., Aerts, Andrea L., ...
Picoeukaryotes are a taxonomically diverse group of organisms less than 2 micrometers in diameter. Photosynthetic marine picoeukaryotes in the genus Micromonas thrive in ecosystems ranging from...
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
Genomic sequence of the xylose fermenting, insect-inhabiting yeast, Pichia stipitis (2007)
Jeffries, Thomas W., Grigoriev, Igor, Grimwood, Jane, Laplaza, Jose M., Aerts, Andrea, Salamov, Asaf, ...
Xylose is a major constituent of angiosperm lignocellulose, so its fermentation is important for bioconversion to fuels and chemicals. Pichia stipitis is the best-studied native xylose fermenting...
The Chlamydomonas genome reveals the evolution of key animal and plant functions. (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
The sequence and analysis of duplication rich human chromosome 16 (2004)
Martin, Joel, Han, Cliff, Gordon, Laurie A., Terry, Astrid, Prabhakar, Shyam, She, Xinwei, ...
We report here the 78,884,754 base pairs of finished human chromosome 16 sequence, representing over 99.9 percent of its euchromatin. Manual annotation revealed 880 protein coding genes confirmed by...
The complete sequence of human chromosome 5 (2004)
Schmutz, Jeremy, Martin, Joel, Terry, Astrid, Couronne, Olivier, Grimwood, Jane, Lowry, State, ...
Chromosome 5 is one of the largest human chromosomes yet has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of noncoding...
Gene Conversion and the Evolution of Protocadherin Gene Cluster Diversity (2004)
Noonan, James P., Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Myers, Richard M.
The synaptic cell adhesion molecules encoded by the protocadherin gene cluster are hypothesized to provide a molecular code involved in the generation of synaptic complexity in the developing brain....
Leem, Sun-Hee, Kouprina, Natalay, Grimwood, Jane, Kim, Jung-Hyun, Mullokandov, Michael, Yoon, Young-Ho, ...
The reported human genome sequence includes about 400 gaps of unknown sequence that were not found in the bacterial artificial chromosome (BAC) and cosmid libraries used for sequencing of the genome....
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes (2004)
Noonan, James P., Grimwood, Jane, Danke, Joshua, Schmutz, Jeremy, Dickson, Mark, Amemiya, Chris T., ...
The coelacanth is one of the nearest living relatives of tetrapods. However, a teleost species such as zebrafish or Fugu is typically used as the outgroup in current tetrapod comparative sequence...
Leem, Sun-Hee, Kouprina, Natalay, Grimwood, Jane, Kim, Jung-Hyun, Mullokandov, Michael, Yoon, Young-Ho, ...
The reported human genome sequence includes about 400 gaps of unknown sequence that were not found in the bacterial artificial chromosome (BAC) and cosmid libraries used for sequencing of the genome....
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes (2004)
Noonan, James P., Grimwood, Jane, Danke, Joshua, Schmutz, Jeremy, Dickson, Mark, Amemiya, Chris T., ...
The coelacanth is one of the nearest living relatives of tetrapods. However, a teleost species such as zebrafish or Fugu is typically used as the outgroup in current tetrapod comparative sequence...
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters (2001)
Wu, Qiang, Zhang, Theresa, Cheng, Jan-Fang, Kim, Youngwook, Grimwood, Jane, Schmutz, Jeremy, ...
Attachment of Toxoplasma gondii to a Specific Membrane Fraction of CHO Cells
Dutta, Chaitali, Grimwood, Jane, Kasper, Lloyd H.
We have observed previously that attachment of Toxoplasma gondii to synchronized host cells is considerably increased at the mid-S phase (4 h postrelease). Synchronized CHO host cells at the mid-S...
Expression of Chlamydia pneumoniae Polymorphic Membrane Protein Family Genes
Grimwood, Jane, Olinger, Lynn, Stephens, Richard S.
The genome of the obligate intracellular bacterium Chlamydia pneumoniae CWL029 encodes a family of 21 proteins with predicted outer membrane localization. These polymorphic membrane proteins (Pmps)...
Coding potential of laboratory and clinical strains of human cytomegalovirus
Murphy, Eain, Yu, Dong, Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Jarvis, Michael A., ...
Six strains of human cytomegalovirus have been sequenced, including two laboratory strains (AD169 and Towne) that have been extensively passaged in fibroblasts and four clinical isolates that have...
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
Wu, Qiang, Zhang, Theresa, Cheng, Jan-Fang, Kim, Youngwook, Grimwood, Jane, Schmutz, Jeremy, ...
The genomic organization of the human protocadherin α, β, and γ gene clusters (designated Pcdhα [gene symbol PCDHA], Pcdhβ [PCDHB], and Pcdhγ [PCDHG]) is remarkably similar to that of...
Leem, Sun-Hee, Kouprina, Natalay, Grimwood, Jane, Kim, Jung-Hyun, Mullokandov, Michael, Yoon, Young-Ho, ...
The reported human genome sequence includes about 400 gaps of unknown sequence that were not found in the bacterial artificial chromosome (BAC) and cosmid libraries used for sequencing of the genome....
Gene Conversion and the Evolution of Protocadherin Gene Cluster Diversity
Noonan, James P., Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Myers, Richard M.
The synaptic cell adhesion molecules encoded by the protocadherin gene cluster are hypothesized to provide a molecular code involved in the generation of synaptic complexity in the developing brain....
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
Noonan, James P., Grimwood, Jane, Danke, Joshua, Schmutz, Jeremy, Dickson, Mark, Amemiya, Chris T., ...
The coelacanth is one of the nearest living relatives of tetrapods. However, a teleost species such as zebrafish or Fugu is typically used as the outgroup in current tetrapod comparative sequence...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
Attachment of Toxoplasma gondii to a Specific Membrane Fraction of CHO Cells
Dutta, Chaitali, Grimwood, Jane, Kasper, Lloyd H.
We have observed previously that attachment of Toxoplasma gondii to synchronized host cells is considerably increased at the mid-S phase (4 h postrelease). Synchronized CHO host cells at the mid-S...
Expression of Chlamydia pneumoniae Polymorphic Membrane Protein Family Genes
Grimwood, Jane, Olinger, Lynn, Stephens, Richard S.
The genome of the obligate intracellular bacterium Chlamydia pneumoniae CWL029 encodes a family of 21 proteins with predicted outer membrane localization. These polymorphic membrane proteins (Pmps)...
Coding potential of laboratory and clinical strains of human cytomegalovirus
Murphy, Eain, Yu, Dong, Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Jarvis, Michael A., ...
Six strains of human cytomegalovirus have been sequenced, including two laboratory strains (AD169 and Towne) that have been extensively passaged in fibroblasts and four clinical isolates that have...
Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
Wu, Qiang, Zhang, Theresa, Cheng, Jan-Fang, Kim, Youngwook, Grimwood, Jane, Schmutz, Jeremy, ...
The genomic organization of the human protocadherin α, β, and γ gene clusters (designated Pcdhα [gene symbol PCDHA], Pcdhβ [PCDHB], and Pcdhγ [PCDHG]) is remarkably similar to that of...
Leem, Sun-Hee, Kouprina, Natalay, Grimwood, Jane, Kim, Jung-Hyun, Mullokandov, Michael, Yoon, Young-Ho, ...
The reported human genome sequence includes about 400 gaps of unknown sequence that were not found in the bacterial artificial chromosome (BAC) and cosmid libraries used for sequencing of the genome....
Gene Conversion and the Evolution of Protocadherin Gene Cluster Diversity
Noonan, James P., Grimwood, Jane, Schmutz, Jeremy, Dickson, Mark, Myers, Richard M.
The synaptic cell adhesion molecules encoded by the protocadherin gene cluster are hypothesized to provide a molecular code involved in the generation of synaptic complexity in the developing brain....
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
Noonan, James P., Grimwood, Jane, Danke, Joshua, Schmutz, Jeremy, Dickson, Mark, Amemiya, Chris T., ...
The coelacanth is one of the nearest living relatives of tetrapods. However, a teleost species such as zebrafish or Fugu is typically used as the outgroup in current tetrapod comparative sequence...
Noonan, James P., Li, Jun, Nguyen, Loan, Caoile, Chenier, Dickson, Mark, Grimwood, Jane, ...
Regions of extensive linkage disequilibrium (LD) appear to be a common feature of the human genome. However, the mechanisms that maintain these regions are unknown. In an effort to understand whether...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Palenik, Brian, Grimwood, Jane, Aerts, Andrea, Rouzé, Pierre, Salamov, Asaf, Putnam, Nicholas, ...
The smallest known eukaryotes, at ≈1-μm diameter, are Ostreococcus tauri and related species of marine phytoplankton. The genome of Ostreococcus lucimarinus has been completed and compared with...
The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion
Coleman, Jeffrey J., Rounsley, Steve D., Rodriguez-Carres, Marianela, Kuo, Alan, Wasmann, Catherine C., Grimwood, Jane, ...
The ascomycetous fungus Nectria haematococca, (asexual name Fusarium solani), is a member of a group of >50 species known as the “Fusarium solani species complex”. Members of this complex have...