Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the...
IDEA: Interactive Display for Evolutionary Analyses (2008)
Egan, Amy, Mahurkar, Anup, Crabtree, Jonathan, Badger, Jonathan H, Carlton, Jane M, Silva, Joana C
Abstract Background The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints and other...
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
© 2008 The Authors. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License. The definitive version was published in Nucleic Acids...
Local Adaptation and Vector-Mediated Population Structure in Plasmodium vivax Malaria (2008)
Joy, Deirdre A., Gonzalez-Ceron, Lilia, Carlton, Jane M., Gueye, Amy, Fay, Michael, McCutchan, Thomas F., ...
Plasmodium vivax in southern Mexico exhibits different infectivities to 2 local mosquito vectors, Anopheles pseudopunctipennis and Anopheles albimanus. Previous work has tied these differences in...
BioMed Central Software IDEA: Interactive Display for Evolutionary Analyses (2008)
Bmc Bioinformatics, Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H Badger, Jane M Carlton, ...
© 2008 Egan et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis (2007)
Carlton, Jane M., Hirt, Robert P., Silva, Joana C., Delcher, Arthur L., Schatz, Michael, Zhao, Qi, ...
We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted human pathogen. Repeats and transposable elements comprise about two-thirds of the ~160-megabase genome,...
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis (2007)
Carlton, Jane M., Hirt, Robert ., Silva, Joana C., Delcher, Arthur L., Schatz, Michael, Zhao, Qi, ...
We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted human pathogen. Repeats and transposable elements comprise about two-thirds of the similar to 160-megabase...
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis (2007)
Carlton, Jane M., Hirt, Robert ., Silva, Joana C., Delcher, Arthur L., Schatz, Michael, Zhao, Qi, ...
We describe the genome sequence of the protist Trichomonas vaginalis, a sexually transmitted human pathogen. Repeats and transposable elements comprise about two-thirds of the similar to 160-megabase...
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. (2006)
Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote (2006)
Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote (2006)
Jonathan A. Eisen, Robert S. Coyne, Martin Wu, Dongying Wu, Mathangi Thiagarajan, Jennifer R. Wortman, ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites (2006)
Sargeant, Tobias J, Marti, Matthias, Caler, Elisabet, Carlton, Jane M, Simpson, Ken, Speed, Terence P, ...
Abstract Background The apicomplexan parasite Plasmodium falciparum causes the most severe form of malaria in humans. After invasion into erythrocytes, asexual parasite stages drastically alter their...
Haddad, Diana, Bilcikova, Erika, Witney, Adam A., Carlton, Jane M., White, Charles E., Blair, Peter L., ...
We describe a novel approach for identifying target antigens for preerythrocytic malaria vaccines. Our strategy is to rapidly test hundreds of DNA vaccines encoding exons from the Plasmodium yoelii...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote (2006)
Eisen, Jonathan A., Coyne, Robert S., Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R., ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote (2006)
Eisen, Jonathan A., Coyne, Robert S., Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R., ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
falciparum antigens by antigenic analysis of genomic and proteomic (2006)
Z. Bozdech, M. Llinas, B. L. Pulliam, E. D. Wong, J. Zhu, Z. Bozdech, ...
plasmodium
Jane M. Carlton, Shelby L. Bidwell, Neil Hall, Jai Ramesar, Chris J. Janse, ...
Whole-genome comparisons are highly informative regarding genome evolution and can reveal the conservation of genome organization and gene content, gene regulatory elements, and presence of...
A Potentially Functional Mariner Transposable Element in the Protist Trichomonas vaginalis (2005)
Silva, Joana C., Bastida, Felix, Bidwell, Shelby L., Johnson, Patricia J., Carlton, Jane M.
Mariner transposable elements encoding a D,D34D motif–bearing transposase are characterized by their pervasiveness among, and exclusivity to, animal phyla. To date, several hundred sequences have...
A Potentially Functional Mariner Transposable Element in the Protist Trichomonas vaginalis (2004)
Silva, Joana C., Bastida, Felix, Bidwell, Shelby L., Johnson, Patricia J., Carlton, Jane M.
Mariner transposable elements encoding a D,D34D motif-bearing transposase are characterized by their pervasiveness among, and exclusivity to, animal phyla. To date several hundred sequences have been...
A Potentially Functional Mariner Transposable Element in the Protist Trichomonas vaginalis (2004)
Silva, Joana C., Bastida, Felix, Bidwell, Shelby L., Johnson, Patricia J., Carlton, Jane M.
Mariner transposable elements encoding a D,D34D motif-bearing transposase are characterized by their pervasiveness among, and exclusivity to, animal phyla. To date several hundred sequences have been...
Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax
Feng, Xiaorong, Carlton, Jane M., Joy, Deirdre A., Mu, Jianbing, Furuya, Tetsuya, Suh, Bernard B., ...
The study of genetic variation in malaria parasites has practical significance for developing strategies to control the disease. Vaccines based on highly polymorphic antigens may be confounded by...
Haddad, Diana, Bilcikova, Erika, Witney, Adam A., Carlton, Jane M., White, Charles E., Blair, Peter L., ...
We describe a novel approach for identifying target antigens for preerythrocytic malaria vaccines. Our strategy is to rapidly test hundreds of DNA vaccines encoding exons from the Plasmodium yoelii...
Kooij, Taco W. A, Carlton, Jane M, Bidwell, Shelby L, Hall, Neil, Ramesar, Jai, Janse, Chris J, ...
Whole-genome comparisons are highly informative regarding genome evolution and can reveal the conservation of genome organization and gene content, gene regulatory elements, and presence of...
A Potentially Functional Mariner Transposable Element in the Protist Trichomonas vaginalis
Silva, Joana C., Bastida, Felix, Bidwell, Shelby L., Johnson, Patricia J., Carlton, Jane M.
Mariner transposable elements encoding a D,D34D motif-bearing transposase are characterized by their pervasiveness among, and exclusivity to, animal phyla. To date several hundred sequences have been...
Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites
Sargeant, Tobias J, Marti, Matthias, Caler, Elisabet, Carlton, Jane M, Simpson, Ken, Speed, Terence P, ...
A new software was used to predict exported proteins that are conserved between malaria parasites infecting rodents and those infecting humans, revealing a lineage-specific expansion of exported...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax
Feng, Xiaorong, Carlton, Jane M., Joy, Deirdre A., Mu, Jianbing, Furuya, Tetsuya, Suh, Bernard B., ...
The study of genetic variation in malaria parasites has practical significance for developing strategies to control the disease. Vaccines based on highly polymorphic antigens may be confounded by...
Haddad, Diana, Bilcikova, Erika, Witney, Adam A., Carlton, Jane M., White, Charles E., Blair, Peter L., ...
We describe a novel approach for identifying target antigens for preerythrocytic malaria vaccines. Our strategy is to rapidly test hundreds of DNA vaccines encoding exons from the Plasmodium yoelii...
Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis
Vaňáčová, Štěpánka, Yan, Weihong, Carlton, Jane M., Johnson, Patricia J.
Eukaryotes have evolved elaborate splicing mechanisms to remove introns that would otherwise destroy the protein-coding capacity of genes. Nuclear premRNA splicing requires sequence motifs in the...
Kooij, Taco W. A, Carlton, Jane M, Bidwell, Shelby L, Hall, Neil, Ramesar, Jai, Janse, Chris J, ...
Whole-genome comparisons are highly informative regarding genome evolution and can reveal the conservation of genome organization and gene content, gene regulatory elements, and presence of...
Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites
Sargeant, Tobias J, Marti, Matthias, Caler, Elisabet, Carlton, Jane M, Simpson, Ken, Speed, Terence P, ...
A new software was used to predict exported proteins that are conserved between malaria parasites infecting rodents and those infecting humans, revealing a lineage-specific expansion of exported...
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, ...
The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct...
Local Adaptation and Vector-Mediated Population Structure in Plasmodium vivax Malaria
Joy, Deirdre A., Gonzalez-Ceron, Lilia, Carlton, Jane M., Gueye, Amy, Fay, Michael, McCutchan, Thomas F., ...
Plasmodium vivax in southern Mexico exhibits different infectivities to 2 local mosquito vectors, Anopheles pseudopunctipennis and Anopheles albimanus. Previous work has tied these differences in...
IDEA: Interactive Display for Evolutionary Analyses
Egan, Amy, Mahurkar, Anup, Crabtree, Jonathan, Badger, Jonathan H, Carlton, Jane M, Silva, Joana C
Bozdech, Zbynek, Mok, Sachel, Hu, Guangan, Imwong, Mallika, Jaidee, Anchalee, Russell, Bruce, ...
Plasmodium vivax causes over 100 million clinical infections each year. Primarily because of the lack of a suitable culture system, our understanding of the biology of this parasite lags...
Aurrecoechea, Cristina, Brestelli, John, Brunk, Brian P., Carlton, Jane M., Dommer, Jennifer, Fischer, Steve, ...
GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the...