RADAR: a web server for RNA data analysis and research (2007)
Khaladkar, Mugdha, Bellofatto, Vivian, Wang, Jason T. L., Tian, Bin, Shapiro, Bruce A.
RADAR is a web server that provides a multitude of functionality for RNA data analysis and research. It can align structure-annotated RNA sequences so that both sequence and structure information are...
Complementary classification approaches for protein sequences (1996)
Wang, Jason T.L., Marr, Thomas G., Shasha, Dennis, Shapiro, Bruce A., Chirn, Gung-Wei, Lee, T.Y.
We have studied five methods of protein classification and have applied them to the 768 groups of related proteins in the PROSITE catalog. Four of these methods are based on searching a database of...
Wang, Jason T.L., Marr, Thomas G., Shasha, Dennis, Shapiro, Bruce A., Chirn, Gung-Wei
We describe a method for discovering active motifs in a set of related protein sequences. The method is an automatic two step process: (1) find candidate motifs in a small sample of the sequences;...
RADAR: a web server for RNA data analysis and research
Khaladkar, Mugdha, Bellofatto, Vivian, Wang, Jason T. L., Tian, Bin, Shapiro, Bruce A.
RADAR is a web server that provides a multitude of functionality for RNA data analysis and research. It can align structure-annotated RNA sequences so that both sequence and structure information are...
Fast Structural Search in Phylogenetic Databases
Wang, Jason T. L., Shan, Huiyuan, Shasha, Dennis, Piel, William H.
As the size of phylogenetic databases grows, the need for efficiently searching these databases arises. Thanks to previous and ongoing research, searching by attribute value and by text has become...