Aude Liefooghe, Hélène Touzet, Jean-stéphane Varré, Lifl Umr
à grande échelle de motifs nucléiques décrits
Efficient and accurate P-value computation for Position Weight Matrices (2007)
Touzet, Hélène, Varré, Jean-Stéphane
Abstract Background Position Weight Matrices (PWMs) are probabilistic representations of signals in sequences. They are widely used to model approximate patterns in DNA or in protein sequences. The...
Efficient and accurate P-value computation for Position Weight Matrices (2007)
Touzet, Hélène, Varré, Jean-Stéphane
Background Position Weight Matrices (PWMs) are probabilistic representations of signals in sequences. They are widely used to model approximate patterns in DNA or in protein sequences. The usage of...
Efficient and accurate P-value computation for Position Weight Matrices (2007)
Touzet, Hélène, Varré, Jean-Stéphane
Background Position Weight Matrices (PWMs) are probabilistic representations of signals in sequences. They are widely used to model approximate patterns in DNA or in protein sequences. The usage of...
Hélène Touzet, Jean-stéphane Varré
Background: Position Weight Matrices (PWMs) are probabilistic representations of signals in sequences. They are widely used to model approximate patterns in DNA or in protein sequences. The usage of...
Team sequoia - Algorithms for large-scale sequence analysis - INRIA Activity Report (2006)
Gregory Kucherov, Hélène Touzet, Mathieu Giraud, Maude Pupin, Jean-Stéphane Varré, Laurent Noé, ...
Large Scale Matching for Position Weight Matrices (2006)
Aude Liefooghe, Hélène Touzet, Jean-stéphane Varré
Abstract. This paper addresses the problem of multiple pattern matching for motifs encoded by Position Weight Matrices. We first present an algorithm that uses a multi-index table to preprocess the...
Jean-stéphane Varré, Luc Lienard, David Dauville E, Yann Gue Rardel, Alain Bule On, ...
Abstract. Single-celled apicomplexan parasites are known to cause major diseases in humans and animals including malaria, toxoplasmosis, and coccidiosis. The presence of apicoplasts with the remnant...