Faith, Jeremiah J., Driscoll, Michael E., Fusaro, Vincent A., Cosgrove, Elissa J., Hayete, Boris, Juhn, Frank S., ...
Many Microbe Microarrays Database (M3D) is designed to facilitate the analysis and visualization of expression data in compendia compiled from multiple laboratories. M3D contains over a thousand...
Faith, Jeremiah J, Olson, Andrew J, Gardner, Timothy S, Sachidanandam, Ravi
Abstract Background Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of larger genome...
Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, ...
Machine learning approaches offer the potential to systematically identify transcriptional regulatory interactions from a compendium of microarray expression profiles. However, experimental...
Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, ...
Machine learning approaches offer the potential to systematically identify transcriptional regulatory interactions from a compendium of microarray expression profiles. However, experimental...
Many Microbe Microarrays Database: uniformly (2007)
Jeremiah J. Faith, Michael E. Driscoll, Vincent A. Fusaro, Elissa J. Cosgrove, Boris Hayete, Frank S. Juhn, ...
doi:10.1093/nar/gkm815
Bmc Bioinformatics, Jeremiah J Faith, Andrew J Olson, Timothy S Gardner, Ravi Sachidanandam
Software Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity (2006)
Nahum, Laila A, Reynolds, Matthew T, Wang, Zhengyuan O, Faith, Jeremiah J, Jonna, Rahul, Jiang, Zhi J, ...
Abstract Background Evolutionary genomics requires management and filtering of large numbers of diverse genomic sequences for accurate analysis and inference on evolutionary processes of genomic and...
EGenBio : a data management system for evolutionary genomics and biodiversity (2006)
Nahum, Laila A., Reynolds, Matthew T., Wang, Zhengyuan O., Faith, Jeremiah J., Jonna, Rahul, Jiang, Zhi J., ...
From The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society Baton Rouge, Louisiana. 2–4 March, 2006.
EGenBio : a data management system for evolutionary genomics and biodiversity (2006)
Nahum, Laila A., Reynolds, Matthew T., Wang, Zhengyuan O., Faith, Jeremiah J., Jonna, Rahul, Jiang, Zhi J., ...
From The Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society Baton Rouge, Louisiana. 2–4 March, 2006.
2.1. Mechanisms of RNA regulation.................................................... 68 (2005)
Timothy S. Gardner, Jeremiah J. Faith
Microarray technologies, which enable the simultaneous measurement of all RNA transcripts in a cell, have spawned the development of algorithms for reverse-engineering transcription control networks....
Evolution of base-substitution gradients in primate mitochondrial genomes (2005)
Raina, Sameer Z., Faith, Jeremiah J., Disotell, Todd R., Seligmann, Hervé, Stewart, Caro-Beth, Pollock, David D.
Inferences of phylogenies and dates of divergence rely on accurate modeling of evolutionary processes; they may be confounded by variation in substitution rates among sites and changes in...
Evolution of base-substitution gradients in primate mitochondrial genomes
Raina, Sameer Z., Faith, Jeremiah J., Disotell, Todd R., Seligmann, Hervé, Stewart, Caro-Beth, Pollock, David D.
Inferences of phylogenies and dates of divergence rely on accurate modeling of evolutionary processes; they may be confounded by variation in substitution rates among sites and changes in...
Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes.
Faith, Jeremiah J, Pollock, David D
Protein-coding genes in mitochondrial genomes have varying degrees of asymmetric skew in base frequencies at the third codon position. The variation in skew among genes appears to be caused by...
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Nahum, Laila A, Reynolds, Matthew T, Wang, Zhengyuan O, Faith, Jeremiah J, Jonna, Rahul, Jiang, Zhi J, ...
Evolution of base-substitution gradients in primate mitochondrial genomes
Raina, Sameer Z., Faith, Jeremiah J., Disotell, Todd R., Seligmann, Hervé, Stewart, Caro-Beth, Pollock, David D.
Inferences of phylogenies and dates of divergence rely on accurate modeling of evolutionary processes; they may be confounded by variation in substitution rates among sites and changes in...
Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes.
Faith, Jeremiah J, Pollock, David D
Protein-coding genes in mitochondrial genomes have varying degrees of asymmetric skew in base frequencies at the third codon position. The variation in skew among genes appears to be caused by...
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Nahum, Laila A, Reynolds, Matthew T, Wang, Zhengyuan O, Faith, Jeremiah J, Jonna, Rahul, Jiang, Zhi J, ...
Faith, Jeremiah J, Hayete, Boris, Thaden, Joshua T, Mogno, Ilaria, Wierzbowski, Jamey, Cottarel, Guillaume, ...
Machine learning approaches offer the potential to systematically identify transcriptional regulatory interactions from a compendium of microarray expression profiles. However, experimental...
Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context
Faith, Jeremiah J, Olson, Andrew J, Gardner, Timothy S, Sachidanandam, Ravi
Faith, Jeremiah J., Driscoll, Michael E., Fusaro, Vincent A., Cosgrove, Elissa J., Hayete, Boris, Juhn, Frank S., ...
Many Microbe Microarrays Database (M3D) is designed to facilitate the analysis and visualization of expression data in compendia compiled from multiple laboratories. M3D contains over a thousand...