Joe Dundas

Publication List Details

Period

2006 - 2008

Number

7

Co-Authors

Topology Independent Protein Structural Alignment (2008)

Joe Dundas, T. A. Binkowski, Bhaskar Dasgupta, Jie Liang

Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural units of two similar...

Topology independent protein structural alignment (2007)

Dundas, Joe, Binkowski, TA, DasGupta, Bhaskar, Liang, Jie

Abstract Background Identifying structurally similar proteins with different chain topologies can aid studies in homology modeling, protein folding, protein design, and protein evolution. These...

Research article Topology independent protein structural alignment (2007)

Joe Dundas, Ta Binkowski, Bhaskar Dasgupta, Jie Liang, Jie Liang

© 2007 Dundas et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues (2006)

Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie

Cavities on a proteins surface as well as specific amino acid positioning within it create the physicochemical properties needed for a protein to perform its function. CASTp...

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie

Cavities on a proteins surface as well as specific amino acid positioning within it create the physicochemical properties needed for a protein to perform its function. CASTp () is an online tool that...

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

Dundas, Joe, Ouyang, Zheng, Tseng, Jeffery, Binkowski, Andrew, Turpaz, Yaron, Liang, Jie

Cavities on a proteins surface as well as specific amino acid positioning within it create the physicochemical properties needed for a protein to perform its function. CASTp () is an online tool that...