Medical Sequencing at the Extremes of Human Body Mass REPORT (2008)
Nadav Ahituv, Nihan Kavaslar, Wendy Schackwitz, Anna Ustaszewska, Joel Martin, Sybil Hébert, ...
Body weight is a quantitative trait with significant heritability in humans. To identify potential genetic contributors to this phenotype, we resequenced the coding exons and splice junctions of 58...
Efficient Optical Communications Using Multi-Bit Differential Signaling (2008)
Donald M. Chiarulli, Steven P. Levitan, Samuel J. Dickerson, Jason D. Bakos, Joel Martin
We present an alternative signaling method for multi-channel fiber ribbon based optical links. The method is based on a hybrid of differential signaling and single-ended channels. Channels are...
Romanian–English, and English–Hindi (2008)
Joel Martin, Rada Mihalcea, Ted Pedersen
This paper presents the task definition, resources, participating systems, and comparative results for the shared task on word alignment, which was organized
Romanian–English, and English–Hindi (2008)
Joel Martin, Rada Mihalcea, Ted Pedersen
This paper presents the task definition, resources, participating systems, and comparative results for the shared task on word alignment, which was organized
Question Answering System. (2007)
on the question answering task look a lot like 0. This paper describes our brute force approach to the question answering task and how we did achieve some success, despite formatting problems with...
An Automated Method for Studying Interactive Systems (2007)
Berry De Bruijn, Robert Holte, Joel Martin
Information Retrieval experiments rarely examine more than a small number of user or system characteristics because of the limited availability of human subjects. In this article we present an...
Abstract: Literature mining in molecular biology (2007)
Literature mining is the process of extracting and combining facts from scientific publications. In recent years, many studies have resulted in computer programs to extract various molecular biology...
Bmc Bioinformatics, Ian Donaldson, Joel Martin, Berry De Bruijn, Cheryl Wolting, Vicki Lay, ...
Research article PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine
Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data (2007)
King, David C., Taylor, James, Zhang, Ying, Cheng, Yong, Lawson, Heather A., Martin, Joel, ...
Identification of functional genomic regions using interspecies comparison will be most effective when the full span of relationships between genomic function and evolutionary constraint are...
Improving translation quality by discarding most of the phrasetable (2007)
It is possible to reduce the bulk of phrasetables for Statistical Machine Translation using a technique based on the significance testing of phrase pair co-occurrence in the parallel corpus. The...
Bmc Genomics, Joy X Lei, Hui Shen, Boleslaw Lach, P Roy Walker, Joel Martin, ...
Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains
Biomedical Digital Libraries BioMed Central (2006)
Jeffrey Demaine, Joel Martin, Lynn Wei, Berry Bruijn, Open Access
LitMiner: integration of library services within a bio-informatics application
Word Alignment for Languages with Scarce Resources (2005)
Joel Martin, Rada Mihalcea, Ted Pedersen
This paper presents the task definition, resources, participating systems, and comparative results for the shared task on word alignment, which was organized as part of the ACL 2005 Workshop on...
The sequence and analysis of duplication rich human chromosome 16 (2004)
Martin, Joel, Han, Cliff, Gordon, Laurie A., Terry, Astrid, Prabhakar, Shyam, She, Xinwei, ...
We report here the 78,884,754 base pairs of finished human chromosome 16 sequence, representing over 99.9 percent of its euchromatin. Manual annotation revealed 880 protein coding genes confirmed by...
The complete sequence of human chromosome 5 (2004)
Schmutz, Jeremy, Martin, Joel, Terry, Astrid, Couronne, Olivier, Grimwood, Jane, Lowry, State, ...
Chromosome 5 is one of the largest human chromosomes yet has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of noncoding...
Aligning and Using an English-Inuktitut Parallel Corpus (2003)
Joel Martin Howard, Joel Martin, Howard Johnson, Benoit Farley, Anna Maclachlan
A parallel corpus of texts in English and in Inuktitut, an Inuit language, is presented.
Aligning and Using an English-Inuktitut Parallel Corpus (2003)
Joel Martin Howard, Joel Martin, Howard Johnson, Benoit Farley, Anna Maclachlan
A parallel corpus of texts in English and in Inuktitut, an Inuit language, is presented.
Aligning and Using an English-Inuktitut Parallel Corpus (2003)
Joel Martin Howard, Joel Martin, Howard Johnson, Benoit Farley, Anna Maclachlan
A parallel corpus of texts in English and in Inuktitut, an Inuit language, is presented.
Finding gene function using LitMiner (2003)
NRC (National Research Council, Canada) submitted 2 sets of results for the primary task in the TREC Genome track. The systems that generated these results were tuned primarily to achieve very high...
Getting to the (c)ore of knowledge: mining biomedical literature (2002)
Council Canada, De Bruijn, Berry De Bruijn, Joel Martin
de l'information
Ask Me Tomorrow: The NRC and University of Ottawa question answering system (1999)
Funny how one extra Perl sort function can make a score of 0.52 1 on the question answering task look a lot like 0. This paper describes our brute force approach to the question answering task and...
Evaluation of an assessment system based on Bayesian student modeling (1998)
Abstract. Schools need assessments of students in order to make informed decisions. The most common assessments are tests consisting of questions or problems that can be answered in under a minute...
Evaluation of an assessment system based on Bayesian student modeling (1998)
Kurt Vanlehn Learning, Kurt Vanlehn, Joel Martin
Schools need assessments of students in order to make informed decisions. The most common assessments are tests consisting of questions or problems that can be answered in under a minute each. When...
Clustering Full Text Documents (1995)
An index or topic hierarchy of full-text documents can organize a domain and speed information retrieval. Traditional indexes, like the Library of Congress system or Dewey Decimal system, are...
Student Assessment Using Bayesian Nets (1995)
This paper will focus exclusively on the problem solving activity. The other activities are described in Martin and VanLehn (1993, in press). This section describes OLAE's input (student...
Focusing attention for observational learning: The importance of context (1989)
A significant component of human observational learning is the ability to focus attention toward important or relevant input features. Amechanism with this capability can serve as an inductive bias...
Automated Information Extraction of Key Trial Design Elements from Clinical Trial Publications
De Bruijn, Berry, Carini, Simona, Kiritchenko, Svetlana, Martin, Joel, Sim, Ida
Clinical trials are one of the most valuable sources of scientific evidence for improving the practice of medicine. The Trial Bank project aims to improve structured access to trial findings by...
Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy
Zhang, Zhen, Alpert, Deanne, Francis, Richard, Chatterjee, Bishwanath, Yu, Qing, Tansey, Terry, ...
Forward genetic screens with ENU (N-ethyl-N-nitrosourea) mutagenesis can facilitate gene discovery, but mutation identification is often difficult. We present the first study in which an ENU- induced...