Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...
Abstract Background Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aberrations such...
Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...
Abstract We present a strategy for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome single nucleotide polymorphism genotyping data. Using a dilution series...
Michela Barbaro, Mikael Oscarson, Jacqueline Schoumans, Johan Staaf, Sten A Ivarsson, Corresponding Michela Barbaro
J Clin Endocrin Metab. First published ahead of print May 15, 2007 as doi:10.1210/jc.2007-0505 Isolated 46,XY gonadal dysgenesis in two sisters caused by a Xp21.2 interstitial duplication
Göran Jönsson, Tara L. Naylor, Johan Vallon-christersson, Johan Staaf, Jia Huang, M. Renee Ward, ...
Mutations in BRCA1 and BRCA2 account for a significant proportion of hereditary breast cancers. Earlier studies have shown that inherited and sporadic tumors progress along different somatic genetic...
Normalization of array-CGH data: influence of copy number imbalances (2007)
Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Vallon-Christersson, Johan
Abstract Background High-resolution microarray-based comparative genomic hybridization (CGH) techniques have successfully been applied to study copy number imbalances in a number of settings such as...
Robust smooth segmentation approach for array CGH data analysis (2007)
Huang, Jian, Gusnanto, Arief, O'Sullivan, Kathleen, Staaf, Johan, Borg, Åke, Pawitan, Yudi
Motivation: Array comparative genomic hybridization (aCGH) provides a genome-wide technique to screen for copy number alteration. The existing segmentation approaches for analyzing aCGH data are...
Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Abstract Background Recent studies revealed that many mammalian protein-coding genes also transcribe their complementary strands. This phenomenon raises questions regarding the validity of data...
Rennstam, Karin, Jonsson, Goran, Tanner, Minna, Bendahl, Par-Ola, Staaf, Johan, Kapanen, Anita I, ...
Abstract is not available
Continuous-index hidden Markov modelling of array CGH copy number data. (2007)
Stjernqvist, Susann, Rydén, Tobias, Skold, Martin, Staaf, Johan
Abstract is not available
Jonsson, Goran, Staaf, Johan, Olsson, Eleonor, Heidenblad, Markus, Vallon-Christersson, Johan, Osoegawa, Kazutoyo, ...
Abstract is not available
Barbaro, Michela, Oscarson, Mikael, Schoumans, Jacqueline, Staaf, Johan, Ivarsson, Sten A, Wedell, Anna
Abstract is not available
Robust smooth segmentation approach for array CGH data analysis. (2007)
Huang, Jian, Gusnanto, Arief, O'sullivan, Kathleen, Staaf, Johan, Borg, Ake, Pawitan, Yudi
Abstract is not available
Kristina K. Lagerstedt, Johan Staaf, Göran Jönsson, Elisabeth Hansson, Christina Lönnroth, Ulf Kressner, ...
Genome wide DNA alterations were evaluated by array CGH in addition to RNA expression profiling in colorectal cancer from patients with excellent and poor survival following primary operations.DNA...
Kristina K. Lagerstedt, Johan Staaf, Göran Jönsson, Elisabeth Hansson, Christina Lönnroth, Ulf Kressner, ...
Genome wide DNA alterations were evaluated by array CGH in addition to RNA expression profiling in colorectal cancer from patients with excellent and poor survival following primary operations.DNA...
Robust smooth segmentation approach for array CGH data (2007)
Jian Huang, Arief Gusnanto, Johan Staaf, Yudi Pawitan, Prof Thomas Lengauer
analysis
Continuous-index hidden Markov modelling of array CGH copy number data (2007)
Stjernqvist, Susann, Rydén, Tobias, Sköld, Martin, Staaf, Johan
Motivation: In recent years a range of techniques for analysis and segmentation of array comparative genomic hybridisation (aCGH) data has been proposed. For array designs in which clones are of...
Jönsson, Göran, Bendahl, Pär-Ola, Sandberg, Therese, Kurbasic, Azra, Staaf, Johan, Sunde, Lone, ...
Abstract is not available
Jönsson, Göran, Naylor, Tara L, Vallon-Christersson, Johan, Staaf, Johan, Huang, Jia, Ward, M Renee, ...
Abstract is not available
If you move from Sweden to Portugal to work as an Art Director at an Ad agency, there are certain things you ought to know. Perhaps even before you decide to move. There are a lot of things that are...
Jönsson, Göran, Bendahl, Pär-Ola, Sandberg, Therese, Kurbasic, Azra, Staaf, Johan, Sunde, Lone, ...
An estimated 10% of all cutaneous malignant melanoma (CMM) cases are inherited, but the genetics of familial CMM are largely unknown. Ocular malignant melanoma (OMM), which is rare, may be associated...
Flexible geniom® one Microarrays im Vergleich mit etablierten Technologien (2004)
Thiel, Anke Thiel, Staaf, Johan, Albrekt, Ann-Sofie, Lindstedt, Malin, Schmidt, Peer
Abstract is not available
ACID: a database for microarray clone information (2004)
Ringnér, Markus, Veerla, Srinivas, Andersson, Samuel, Staaf, Johan, Häkkinen, Jari
Summary: ACID is an online database for information about microarray cDNA clones. For each clone, the database contents include assigned UniGene cluster(s), location in the full-length transcript,...
ACID: a database for microarray clone information (2004)
Ringnér, Markus, Veerla, Srinivas, Andersson, Samuel, Staaf, Johan, Häkkinen, Jari
Summary: Array Close Information Database is an online database for information about microarray cDNA clones. For each clone, the database contents include assigned UniGene cluster(s), location in...
ACID: a database for microarray clone information (2004)
Ringnér, Markus, Veerla, Srinivas, Andersson, Samuel, Staaf, Johan, Häkkinen, Jari
Summary: ACID is an online database for information about microarray cDNA clones. For each clone, the database contents include assigned UniGene cluster(s), location in the full-length transcript,...
Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray
Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Balciuniene, Jorune, Feng, Ningping, Iyadurai, Kelly, Hirsch, Betsy, Charnas, Lawrence, Bill, Brent R., ...
Low-copy repeats (LCRs) are genomic features that affect chromosome stability and can produce disease-associated rearrangements. We describe members of three families with deletions in...
Normalization of array-CGH data: influence of copy number imbalances
Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Vallon-Christersson, Johan
Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...
Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...
A strategy is presented for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome SNP genotyping data.
Lagerstedt, Kristina K., Staaf, Johan, Jönsson, Göran, Hansson, Elisabeth, Lönnroth, Christina, Kressner, Ulf, ...
Genome wide DNA alterations were evaluated by array CGH in addition to RNA expression profiling in colorectal cancer from patients with excellent and poor survival following primary operations.