BASE - 2nd generation software for microarray data management and analysis (2009)
Vallon-Christersson, Johan, Nordborg, Nicklas, Svensson, Martin, Häkkinen, Jari
Abstract Background Microarray experiments are increasing in size and samples are collected asynchronously over long time. Available data are re-analysed as more samples are hybridized. Systematic...
Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...
Abstract Background Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aberrations such...
Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...
Abstract We present a strategy for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome single nucleotide polymorphism genotyping data. Using a dilution series...
Göran Jönsson, Tara L. Naylor, Johan Vallon-christersson, Johan Staaf, Jia Huang, M. Renee Ward, ...
Mutations in BRCA1 and BRCA2 account for a significant proportion of hereditary breast cancers. Earlier studies have shown that inherited and sporadic tumors progress along different somatic genetic...
Normalization of array-CGH data: influence of copy number imbalances (2007)
Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Vallon-Christersson, Johan
Abstract Background High-resolution microarray-based comparative genomic hybridization (CGH) techniques have successfully been applied to study copy number imbalances in a number of settings such as...
Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Abstract Background Recent studies revealed that many mammalian protein-coding genes also transcribe their complementary strands. This phenomenon raises questions regarding the validity of data...
Jonsson, Goran, Staaf, Johan, Olsson, Eleonor, Heidenblad, Markus, Vallon-Christersson, Johan, Osoegawa, Kazutoyo, ...
Abstract is not available
Svensson, Emelie, Vidovic, Karina, Olofsson, Tor, Vallon-Christersson, Johan, Borg, Ake, Gullberg, Urban
Abstract is not available
Holmquist-Mengelbier, Linda, Fredlund, Erik, Lofstedt, Tobias, Noguera, Rosa, Navarro, Samuel, Nilsson, Helén, ...
Abstract is not available
Functional and Molecular Characterization of BRCA1 and BRCA2 Associated Breast Cancer (2005)
This doctoral dissertation is based on five appended papers primarily concerned with three main topics, namely: the functional characterization of specific and clinically relevant perturbations found...
Gene expression profiles relate to SS18/SSX fusion type in synovial sarcoma. (2005)
Fernebro, Josefin, Francis, Princy, Edén, Patrik, Borg, Ake, Panagopoulos, Ioannis, Mertens, Fredrik, ...
Abstract is not available
Jönsson, Göran, Naylor, Tara L, Vallon-Christersson, Johan, Staaf, Johan, Huang, Jia, Ward, M Renee, ...
Abstract is not available
Bengtsson, Henrik, Jönsson, Göran, Vallon-Christersson, Johan
Abstract Background Non-linearities in observed log-ratios of gene expressions, also known as intensity dependent log-ratios, can often be accounted for by global biases in the two channels being...
Jögi, Annika, Vallon-Christersson, Johan, Holmquist, Linda, Axelson, Håkan, Borg, Ake, Påhlman, Sven
Abstract is not available
Obad, Susanna, Brunnström, Hans, Vallon-Christersson, Johan, Borg, Ake, Drott, Kristina, Gullberg, Urban
Abstract is not available
Gadjieva, Rena, Axelsson, Eva, Olsson, Ulf, Vallon-Christersson, Johan, Hansson, Mats
Abstract is not available
Johannsson, Oskar T, Staff, Synnöve, Vallon-Christersson, Johan, Kytöla, Soili, Gudjonsson, Thorarinn, Rennstam, Karin, ...
A human tumor xenograft (L56Br-X1) was established from a breast cancer axillary lymph node metastasis of a 53-year-old woman with a BRCA1 germ-line nonsense mutation (1806C>T; Q563X), and a cell...
Johannsson, Oskar T, Staff, Synnöve, Vallon-Christersson, Johan, Kytöla, Soili, Gudjonsson, Thorarinn, Rennstam, Karin, ...
A human tumor xenograft (L56Br-X1) was established from a breast cancer axillary lymph node metastasis of a 53-year-old woman with a BRCA1 germ-line nonsense mutation (1806C>T; Q563X), and a cell...
Saal, Lao H, Troein, Carl, Vallon-Christersson, Johan, Gruvberger, Sofia, Borg, Åke, Peterson, Carsten
Abstract The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their...
Lao H Saal, Carl Troein, Johan Vallon-christersson, Sofia Gruvberger, Åke Borg, Carsten Peterson
(Print ISSN 1465-6906; Online ISSN 1465-6914) The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the...
Vallon-Christersson, Johan, Cayanan, Charmagne, Haraldsson, Karin, Loman, Niklas, Bergthorsson, Jon Thor, Brøndum-Nielsen, Karen, ...
Germline mutations in the breast and ovarian cancer susceptibility gene BRCA1 are responsible for the majority of cases involving hereditary breast and ovarian cancer. Whereas all truncating...
Saal, Lao H, Troein, Carl, Vallon-Christersson, Johan, Gruvberger, Sofia, Borg, Åke, Peterson, Carsten
The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data...
Saal, Lao H, Troein, Carl, Vallon-Christersson, Johan, Gruvberger, Sofia, Borg, Åke, Peterson, Carsten
The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data...
Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray
Vallon-Christersson, Johan, Staaf, Johan, Kvist, Anders, Medstrand, Patrik, Borg, Åke, Rovira, Carlos
Normalization of array-CGH data: influence of copy number imbalances
Staaf, Johan, Jönsson, Göran, Ringnér, Markus, Vallon-Christersson, Johan
Staaf, Johan, Vallon-Christersson, Johan, Lindgren, David, Juliusson, Gunnar, Rosenquist, Richard, Höglund, Mattias, ...
Staaf, Johan, Lindgren, David, Vallon-Christersson, Johan, Isaksson, Anders, Göransson, Hanna, Juliusson, Gunnar, ...
A strategy is presented for detection of loss-of-heterozygosity and allelic imbalance in cancer cells from whole genome SNP genotyping data.