John S. Garavelli

1 (2007)

Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. Mcgarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, ...

The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIRInternational Protein Sequence Database, in...

Proteomics and beyond : a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA. (2006)

Orchard, Sandra, Apweiler, Rolf, Barkovich, Robert, Field, Dawn, Garavelli, John S., Horn, David, ...

The theme of the third annual Spring workshop of the HUPO-PSI was proteomics and beyond and its underlying goal was to reach beyond the boundaries of the proteomics community to interact with groups...

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry (2004)

LeDuc, Richard D., Taylor, Gregory K., Kim, Yong-Bin, Januszyk, Thomas E., Bynum, Lee H., Sola, Joseph V., ...

ProSight PTM (https://prosightptm.scs.uiuc.edu/) is a web application for identification and characterization of proteins using mass spectra data from ‘top-down’ fragmentation of intact protein...

The RESID Database of Protein Modifications: 2003 developments (2003)

Garavelli, John S.

The RESID Database is a comprehensive collection of annotations and structures for protein pre-, co- and post-translational modifications including amino-terminal, carboxyl-terminal and peptide chain...

The RESID database of protein structure modifications and the NRL-3D sequence-structure database (2001)

John S. Garavelli

Because the number of post-translational modifications requiring standardized annotation in the PIRInternational Protein Sequence Database was large and steadily increasing, a database of protein...

The RESID database of protein structure modifications and the NRL-3D sequence-structure database (2001)

John S. Garavelli, Zhenglin Hou, Nagarajan Pattabiraman, Robert M. Stephens

The RESID Database is a comprehensive collection of annotations and structures for protein post-translational modifications including N-terminal, C-terminal and peptide chain cross-link...

The RESID database of protein structure modifications and the NRL-3D sequence-structure database (2001)

John S. Garavelli

The RESID Database contains supplemental information on post-translational modifications for the standardized annotations appearing in the PIR-International Protein Sequence Database. The RESID...

The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database (2001)

Garavelli, John S., Hou, Zhenglin, Pattabiraman, Nagarajan, Stephens, Robert M.

The RESID Database is a comprehensive collection of annotations and structures for protein post-translational modifications including N-terminal, C-terminal and peptide chain cross-link...

Protein Information Resource: a community resource for expert annotation of protein data (2001)

Barker, Winona C., Garavelli, John S., Hou, Zhenglin, Huang, Hongzhan, Ledley, Robert S., McGarvey, Peter B., ...

The Protein Information Resource, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the most...

The RESID Database of protein structure modifications: 2000 update (2000)

Garavelli, John S.

The RESID Database contains supplemental information on post-translational modifications for the standardized annotations appearing in the PIR-International Protein Sequence Database. The RESID...

The Protein Information Resource (PIR) (2000)

Barker, Winona C., Garavelli, John S., Huang, Hongzhan, McGarvey, Peter B., Orcutt, Bruce C., Srinivasarao, Geetha Y., ...

The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in...

PIR: a new resource for bioinformatics (2000)

McGarvey, Peter B., Huang, Hongzhan, Barker, Winona C., Orcutt, Bruce C., Garavelli, John S., Srinivasarao, Geetha Y., ...

Summary: The Protein Information Resource (PIR) has greatly expanded its Web site and developed a set of interactive search and analysis tools to facilitate the analysis, annotation, and functional...

The PIR-International Protein Sequence Database (1998)

Winona C. Barker, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, Bruce C. Orcutt, ...

From its origin the Protein Information Resource (http://www-nbrf.georgetown.edu/pir/ ) has supported research on evolution and computational biology by designing and compiling a comprehensive,...

The Protein Information Resource (PIR) and the PIR-international protein sequence database (1997)

David G. George, Robert J. Dodson, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, ...

From its origin, the PIR has aspired to support research in computational biology and genomics through the compilation of a comprehensive, quality controlled and well-organized protein sequence...

Protein Information Resource: a community resource for expert annotation of protein data

Barker, Winona C., Garavelli, John S., Hou, Zhenglin, Huang, Hongzhan, Ledley, Robert S., McGarvey, Peter B., ...

The Protein Information Resource, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the most...

The RESID Database of protein structure modifications and the NRL-3D Sequence–Structure Database

Garavelli, John S., Hou, Zhenglin, Pattabiraman, Nagarajan, Stephens, Robert M.

The RESID Database is a comprehensive collection of annotations and structures for protein post-translational modifications including N-terminal, C-terminal and peptide chain cross-link...

The Protein Information Resource (PIR)

Barker, Winona C., Garavelli, John S., Huang, Hongzhan, McGarvey, Peter B., Orcutt, Bruce C., Srinivasarao, Geetha Y., ...

The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in...

The RESID Database of protein structure modifications: 2000 update

Garavelli, John S.

The RESID Database contains supplemental information on post-translational modifications for the standardized annotations appearing in the PIR-International Protein Sequence Database. The RESID...

Hydroxylamine Reductase Activity of the Hybrid Cluster Protein from Escherichia coli

Wolfe, Marcus T., Heo, Jongyun, Garavelli, John S., Ludden, Paul W.

The hybrid cluster protein (HCP; formerly termed the prismane protein) has been extensively studied due to its unique spectroscopic properties. Although the structural and spectroscopic...

The RESID Database of Protein Modifications: 2003 developments

Garavelli, John S.

The RESID Database is a comprehensive collection of annotations and structures for protein pre-, co- and post-translational modifications including amino-terminal, carboxyl-terminal and peptide chain...

Structural and Functional Similarities Between Mitochondrial Malate Dehydrogenase and L-3-Hydroxyacyl CoA Dehydrogenase

Noyes, Barbara E., Glatthaar, Beat E., Garavelli, John S., Bradshaw, Ralpha A.

Pig heart mitochondrial malate dehydrogenase (EC 1.1.1.37), which has been obtained free of electrophoretic subforms, has been shown to have a molecular weight of 67,000 and to be composed of two...

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry

LeDuc, Richard D., Taylor, Gregory K., Kim, Yong-Bin, Januszyk, Thomas E., Bynum, Lee H., Sola, Joseph V., ...

ProSight PTM (https://prosightptm.scs.uiuc.edu/) is a web application for identification and characterization of proteins using mass spectra data from ‘top-down’ fragmentation of intact protein...

Protein Information Resource: a community resource for expert annotation of protein data

Barker, Winona C., Garavelli, John S., Hou, Zhenglin, Huang, Hongzhan, Ledley, Robert S., McGarvey, Peter B., ...

The Protein Information Resource, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the most...

The RESID Database of protein structure modifications and the NRL-3D Sequence–Structure Database

Garavelli, John S., Hou, Zhenglin, Pattabiraman, Nagarajan, Stephens, Robert M.

The RESID Database is a comprehensive collection of annotations and structures for protein post-translational modifications including N-terminal, C-terminal and peptide chain cross-link...

The Protein Information Resource (PIR)

Barker, Winona C., Garavelli, John S., Huang, Hongzhan, McGarvey, Peter B., Orcutt, Bruce C., Srinivasarao, Geetha Y., ...

The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database, in...

The RESID Database of protein structure modifications: 2000 update

Garavelli, John S.

The RESID Database contains supplemental information on post-translational modifications for the standardized annotations appearing in the PIR-International Protein Sequence Database. The RESID...

Hydroxylamine Reductase Activity of the Hybrid Cluster Protein from Escherichia coli

Wolfe, Marcus T., Heo, Jongyun, Garavelli, John S., Ludden, Paul W.

The hybrid cluster protein (HCP; formerly termed the prismane protein) has been extensively studied due to its unique spectroscopic properties. Although the structural and spectroscopic...

The RESID Database of Protein Modifications: 2003 developments

Garavelli, John S.

The RESID Database is a comprehensive collection of annotations and structures for protein pre-, co- and post-translational modifications including amino-terminal, carboxyl-terminal and peptide chain...

Structural and Functional Similarities Between Mitochondrial Malate Dehydrogenase and L-3-Hydroxyacyl CoA Dehydrogenase

Noyes, Barbara E., Glatthaar, Beat E., Garavelli, John S., Bradshaw, Ralpha A.

Pig heart mitochondrial malate dehydrogenase (EC 1.1.1.37), which has been obtained free of electrophoretic subforms, has been shown to have a molecular weight of 67,000 and to be composed of two...

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry

LeDuc, Richard D., Taylor, Gregory K., Kim, Yong-Bin, Januszyk, Thomas E., Bynum, Lee H., Sola, Joseph V., ...

ProSight PTM (https://prosightptm.scs.uiuc.edu/) is a web application for identification and characterization of proteins using mass spectra data from ‘top-down’ fragmentation of intact protein...