Jomuna V. Choudhuri

The missing link: Bordetella petriiis endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae (2008)

Gross, Roy, Guzman, Carlos A, Sebaihia, Mohammed, Martins Dos Santos, Vítor AP, Pieper, Dietmar H, Koebnik, Ralf, ...

Abstract Background Bordetella petrii is the only environmental species hitherto found among the otherwise host-restricted and pathogenic members of the genus Bordetella . Phylogenetically, it...

The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes (2005)

Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, ...

The release of the 1000th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) launched the...

GenAlyzer: Visualizing Sequence Similarities between Entire Genomes (2004)

Jomuna V. Choudhuri, Chris Schleiermacher

GenAlyzer is a software tool designed for the interactive visualisation of sequence matches between DNA or Protein sequences. It provides visualisations on different levels of granularity, from...

GenAlyzer: interactive visualization of sequence similarities between entire genomes (2004)

Choudhuri, Jomuna V., Schleiermacher, Chris, Kurtz, Stefan, Giegerich, Robert

Summary: GenAlyzer is a software tool designed for the interactive visualization of sequence matches between DNA or Protein sequences. It provides visualizations on different levels of granularity,...

GenAlyzer: interactive visualization of sequence similarities between entire genomes (2004)

Choudhuri, Jomuna V., Schleiermacher, Chris, Kurtz, Stefan, Giegerich, Robert

Summary: Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity,...

GenAlyzer: interactive visualization of sequence similarities between entire genomes (2004)

Choudhuri, Jomuna V., Schleiermacher, Chris, Kurtz, Stefan, Giegerich, Robert

Summary: GenAlyzer is a software tool designed for the interactive visualization of sequence matches between DNA or Protein sequences. It provides visualizations on different levels of granularity,...

REPuter: the manifold applications of repeat analysis on a genomic scale (2001)

Kurtz, Stefan, Choudhuri, Jomuna V., Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, Giegerich, Robert

The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The...

REPuter: the manifold applications of repeat analysis on a genomic scale

Kurtz, Stefan, Choudhuri, Jomuna V., Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, Giegerich, Robert

The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The...

The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, ...

The release of the 1000th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) launched the...

REPuter: the manifold applications of repeat analysis on a genomic scale

Kurtz, Stefan, Choudhuri, Jomuna V., Ohlebusch, Enno, Schleiermacher, Chris, Stoye, Jens, Giegerich, Robert

The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The...

The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, ...

The release of the 1000th complete microbial genome will occur in the next two to three years. In anticipation of this milestone, the Fellowship for Interpretation of Genomes (FIG) launched the...