In silicoanalysis of the dog genome identifies Canine Endogenous Retroviruses (CfERVs) (2009)
Barrio, Álvaro, Ekjerlund, Marie, Sperber, Göran O, Blomberg, Jonas, Bongcam-Rudloff, Erik, Andersson, Göran
No abstract available.
LTRs; Universal structure, detection and phylogeny (2009)
Benachenhou, Farid, Sperber, Göran, Blomberg, Jonas
No abstract available.
Sperber, Göran, Lövgren, Anders, Eriksson, Nils-Einar, Benachenhou, Farid, Blomberg, Jonas
Abstract Background The rapid accumulation of genomic information in databases necessitates rapid and specific algorithms for extracting biologically meaningful information. More or less complete...
Martínez Barrio, Álvaro, Lagercrantz, Erik, Sperber, Göran O, Blomberg, Jonas, Bongcam-Rudloff, Erik
Abstract Background The Distributed Annotation System (DAS) is a widely used network protocol for sharing biological information. The distributed aspects of the protocol enable the use of various...
Barrio, Alvaro Martínez, Lagercrantz, Erik, Sperber, Göran O., Blomberg, Jonas, Bongcam-Rudloff, Erik
BACKGROUND: The Distributed Annotation System (DAS) is a widely used network protocol for sharing biological information. The distributed aspects of the protocol enable the use of various reference...
Sperber, Göran, Lövgren, Anders, Eriksson, Nils-Einar, Benachenhou, Farid, Blomberg, Jonas
BACKGROUND: The rapid accumulation of genomic information in databases necessitates rapid and specific algorithms for extracting biologically meaningful information. More or less complete retroviral...
Jobs, Magnus, Eriksson, Ronnie, Ekstrand, Charlotta, Ullberg, Måns, Hermann, Björn, Landegren, Ulf, ...
A new concept for multiplex detection and quantification of microbes is here demonstrated on a range of infectious fungal species. Padlock probe methodology in conjunction with qPCR and Luminex™...
International Journal of Neural Systems, Vol. 15, No. 3 (2005) 163--179 (2008)
World Scientific Publishing, Of Human, Endogenous Retroviral, Sequence Groups, Merja Oja, Göran O. Sperber, ...
this article we will use bootstrap for a di#erent purpose. The data set is here sampled B times with replacement, to produce B bootstrap data sets of the size of the original data set. Some samples...
Automated recognition of retroviral sequences in genomic data RetroTector(C) (2007)
Sperber, Göran O., Airola, Tove, Jern, Patric, Blomberg, Jonas
Eukaryotic genomes contain many endogenous retroviral sequences (ERVs). ERVs are often severely mutated, therefore difficult to detect. A platform independent (Java) program package, RetroTector©...
Oja, Merja, Peltonen, Jaakko, Blomberg, Jonas, Kaski, Samuel
Human endogenous retroviruses (HERVs) are ancient viral sequences within the human DNA. Recently, HERV expression has been detected in humans. However, the expression patterns of individual HERVs are...
Methods for estimating human endogenous retrovirus activities from EST databases (2007)
Oja, Merja, Peltonen, Jaakko, Blomberg, Jonas, Kaski, Samuel
Abstract Background Human endogenous retroviruses (HERVs) are surviving traces of ancient retrovirus infections and now reside within the human DNA. Recently HERV expression has been detected in both...
Methods for estimating human endogenous retrovirus activities from EST databases (2007)
Oja, Merja, Peltonen, Jaakko, Blomberg, Jonas, Kaski, Samuel
Background: Human endogenous retroviruses (HERVs) are surviving traces of ancient retrovirus infections and now reside within the human DNA. Recently HERV expression has been detected in both normal...
Merja Oja, Jaakko Peltonen, Jonas Blomberg, Samuel Kaski Methods, Bmc Bioinformatics, Merja Oja, ...
for estimating human endogenous retrovirus activities from EST
Jern, Patric, Sperber, Göran O, Blomberg, Jonas
Abstract Background Endogenous retroviral sequences (ERVs) are integral parts of most eukaryotic genomes and vastly outnumber exogenous retroviruses (XRVs). ERVs with a relatively complete structure...
Merja Oja, Göran O. Sperber, Jonas Blomberg, Samuel Kaski Selforganizing, Of Human, Endogenous Retroviral, ...
map-based discovery and visualization of human endogenous
Schmidt, Peter, Andersson, Göran, Blomberg, Jonas, Malmsten, Anders, Korsgren, Olle
No abstract available.
Compression mechanisms and strenght properties of semi-isostatically densified wood (2004)
Since most strength properties increase with increased wood density, densifying wood through compression will increase strength and wear resistance. After densification, wood with originally low...
ERV3 and Related Sequences in Humans: Structure and RNA Expression† (2004)
Ann-catrin Andersson, Zhihong Yun, Göran O. Sperber, Erik Larsson, Jonas Blomberg
The ERV3 locus at chromosome 7q11 is a much studied human endogenous retroviral (HERV) sequence, owing to an env open reading frame (ORF) and placental RNA and protein expression. An analysis of the...
Samuel Kaski Grouping, Merja Oja, Merja Oja, Göran Sperber, Göran Sperber, Jonas Blomberg, ...
and visualizing human endogenous retroviruses by bootstrapping
Ieee Personal Use, Merja Oja, Göran Sperber, Jonas Blomberg, Samuel Kaski
About eight percent of the human genome consists of human endogenous retrovirus sequences. Human endogenous retroviruses (HERV) are remains from ancient infections by retroviruses. The HERVs are...
Tynell, Elsa, Andersson, Soren, Lithander, Eva, Arneborn, Malin, Blomberg, Jonas, Hansson, Hans Bertil, ...
Objective: To analyse the cost effectiveness of a national programme to screen blood donors for infection with the human T cell leukaemia/lymphoma virus.
Identification of Novel Porcine Endogenous Betaretrovirus Sequences in Miniature Swine
Ericsson, Thomas, Oldmixon, Beth, Blomberg, Jonas, Rosa, Margaret, Patience, Clive, Andersson, Göran
PCR amplification of genomic DNA from miniature swine peripheral blood lymphocytes, using primers corresponding to highly conserved regions of the polymerase (pol) gene, allowed the identification of...
Herrmann, Björn, Larsson, Viviana Cavaglia, Rubin, Carl-Johan, Sund, Fredrik, Eriksson, Britt-Marie, Arvidson, Johan, ...
A duplex quantitative real-time PCR (qPCR) assay was designed to detect both the polymerase gene (pol) and the glycoprotein gene (gB) of cytomegalovirus (CMV). The detection limit of the qPCR was...
Elfaitouri, Amal, Mohamed, Nahla, Fohlman, Jan, Aspholm, Robert, Frisk, Gun, Friman, Göran, ...
A PCR-enhanced immunoassay (PIA) to detect enterovirus (EV) immunoglobulin M (IgM) for diagnosis of recent EV infection was recently developed. This test was compared with another EV IgM capture...
Sequence Variability, Gene Structure, and Expression of Full-Length Human Endogenous Retrovirus H
Jern, Patric, Sperber, Göran O., Ahlsén, Göran, Blomberg, Jonas
Recently, we identified and classified 926 human endogenous retrovirus H (HERV-H)-like proviruses in the human genome. In this paper, we used the information to, in silico, reconstruct a putative...
ERV3 and Related Sequences in Humans: Structure and RNA Expression†
Andersson, Ann-Catrin, Yun, Zhihong, Sperber, Göran O., Larsson, Erik, Blomberg, Jonas
The ERV3 locus at chromosome 7q11 is a much studied human endogenous retroviral (HERV) sequence, owing to an env open reading frame (ORF) and placental RNA and protein expression. An analysis of the...
Jern, Patric, Sperber, Göran O., Blomberg, Jonas
The human genome is littered by endogenous retrovirus sequences (HERVs), which constitute up to 8% of the total genomic sequence. The sequencing of the human (Homo sapiens) and chimpanzee (Pan...
Tynell, Elsa, Andersson, Soren, Lithander, Eva, Arneborn, Malin, Blomberg, Jonas, Hansson, Hans Bertil, ...
Objective: To analyse the cost effectiveness of a national programme to screen blood donors for infection with the human T cell leukaemia/lymphoma virus.
Identification of Novel Porcine Endogenous Betaretrovirus Sequences in Miniature Swine
Ericsson, Thomas, Oldmixon, Beth, Blomberg, Jonas, Rosa, Margaret, Patience, Clive, Andersson, Göran
PCR amplification of genomic DNA from miniature swine peripheral blood lymphocytes, using primers corresponding to highly conserved regions of the polymerase (pol) gene, allowed the identification of...
Herrmann, Björn, Larsson, Viviana Cavaglia, Rubin, Carl-Johan, Sund, Fredrik, Eriksson, Britt-Marie, Arvidson, Johan, ...
A duplex quantitative real-time PCR (qPCR) assay was designed to detect both the polymerase gene (pol) and the glycoprotein gene (gB) of cytomegalovirus (CMV). The detection limit of the qPCR was...
Elfaitouri, Amal, Mohamed, Nahla, Fohlman, Jan, Aspholm, Robert, Frisk, Gun, Friman, Göran, ...
A PCR-enhanced immunoassay (PIA) to detect enterovirus (EV) immunoglobulin M (IgM) for diagnosis of recent EV infection was recently developed. This test was compared with another EV IgM capture...
Sequence Variability, Gene Structure, and Expression of Full-Length Human Endogenous Retrovirus H
Jern, Patric, Sperber, Göran O., Ahlsén, Göran, Blomberg, Jonas
Recently, we identified and classified 926 human endogenous retrovirus H (HERV-H)-like proviruses in the human genome. In this paper, we used the information to, in silico, reconstruct a putative...
ERV3 and Related Sequences in Humans: Structure and RNA Expression†
Andersson, Ann-Catrin, Yun, Zhihong, Sperber, Göran O., Larsson, Erik, Blomberg, Jonas
The ERV3 locus at chromosome 7q11 is a much studied human endogenous retroviral (HERV) sequence, owing to an env open reading frame (ORF) and placental RNA and protein expression. An analysis of the...
Jern, Patric, Sperber, Göran O., Blomberg, Jonas
The human genome is littered by endogenous retrovirus sequences (HERVs), which constitute up to 8% of the total genomic sequence. The sequencing of the human (Homo sapiens) and chimpanzee (Pan...
Methods for estimating human endogenous retrovirus activities from EST databases
Oja, Merja, Peltonen, Jaakko, Blomberg, Jonas, Kaski, Samuel
Automated recognition of retroviral sequences in genomic data—RetroTector©
Sperber, Göran O., Airola, Tove, Jern, Patric, Blomberg, Jonas
Eukaryotic genomes contain many endogenous retroviral sequences (ERVs). ERVs are often severely mutated, therefore difficult to detect. A platform independent (Java) program package, RetroTector©...
Martínez Barrio, Álvaro, Lagercrantz, Erik, Sperber, Göran O, Blomberg, Jonas, Bongcam-Rudloff, Erik