Automatic Synthesis of Semantics for Context-free Grammars (2007)
Juergen Haas, Bharat Jayaraman
We are investigating the mechanical transformation of an unambiguous context-free grammar (CFG) into a definite-clause grammar (DCG) using a finite set of examples, each of which is a pair hs; mi,...
Decoding Randomly Ordered DNA Arrays (2004)
Gunderson, Kevin L., Kruglyak, Semyon, Graige, Michael S., Garcia, Francisco, Kermani, Bahram G., Zhao, Chanfeng, ...
We have developed a simple and efficient algorithm to identify each member of a large collection of DNA-linked objects through the use of hybridization, and have applied it to the manufacture of...
EpoDB: a database of genes expressed during vertebrate erythropoiesis (1998)
Fidel Salas, Juergen Haas, Brian Brunk, Christian J. Stoeckert, G. Christian Overton
EpoDB is a database designed for the study of gene regulation during differentiation and development of vertebrate red blood cells. In building EpoDB, we have taken the in advance approach to the...
EpoDB: a database of genes expressed during vertebrate erythropoiesis (1998)
Fidel Salas, Juergen Haas, Brian Brunk, Christian J. Stoeckert, G. Christian Overton
EpoDB is a database designed for the study of gene regulation during differentiation and development of vertebrate red blood cells. In building EpoDB, we have taken the in advance approach to the...
QGB: A System for Querying Sequence Database Fields and Features (1994)
G. Christian Overton, Jeffrey S. Aaronson, Juergen Haas, Julie Adams
We have developed a general system, QGB, for performing complex queries on the information in the DDBJ/EMBL/GenBank databases, including queries over the structural features of sequences implied in...
Photocopy of typescript.
From Context-Free To Definite-Clause Grammars: A Type-Theoretic Approach (1993)
Juergen Haas, Bharat Jayaraman
This paper is concerned with the problem of inferring semantics of a language from examples, assuming that we are already given its syntax. More precisely, we assume that the syntax is given using an...
Knowledge Discovery in GenBank (1993)
Jeffrey S. Aaronson, Juergen Haas, G. Christian Overton
We describe various methods designed to discover knowledge in the GenBank nucleic acid sequence database. Using a grammatical model of gene structure, we create a parse tree of a gene using features...
Analogical Reasoning for Knowledge Discovery in a Molecular Biology Database (1993)
Juergen Haas, Jeffrey S. Aaronson, G. Christian Overton
Genes are highly structured objects. Identifying genetic structure is experimentally costly and in general, is only partially determined in the lab. As such, genomic databases such as GenBank are...
Spine title: Lattice thermal expansion in cordierite.
Decoding Randomly Ordered DNA Arrays
Gunderson, Kevin L., Kruglyak, Semyon, Graige, Michael S., Garcia, Francisco, Kermani, Bahram G., Zhao, Chanfeng, ...
We have developed a simple and efficient algorithm to identify each member of a large collection of DNA-linked objects through the use of hybridization, and have applied it to the manufacture of...
Decoding Randomly Ordered DNA Arrays
Gunderson, Kevin L., Kruglyak, Semyon, Graige, Michael S., Garcia, Francisco, Kermani, Bahram G., Zhao, Chanfeng, ...
We have developed a simple and efficient algorithm to identify each member of a large collection of DNA-linked objects through the use of hybridization, and have applied it to the manufacture of...
Reactivation of the p53 pathway as a treatment modality for KSHV-induced lymphomas
Sarek, Grzegorz, Kurki, Sari, Enbäck, Juulia, Iotzova, Guergana, Haas, Juergen, Laakkonen, Pirjo, ...
Kaposi’s sarcoma herpesvirus (KSHV) is the etiologic agent for primary effusion lymphoma (PEL), a non–Hodgkin type lymphoma manifesting as an effusion malignancy in the affected individual....
Epstein-Barr Virus Encodes Three Bona Fide Ubiquitin-Specific Proteases▿ ‡
Sompallae, Ramakrishna, Gastaldello, Stefano, Hildebrand, Sebastian, Zinin, Nikolay, Hassink, Gerco, Lindsten, Kristina, ...
Manipulation of the ubiquitin proteasome system (UPS) is emerging as a common theme in viral pathogenesis. Some viruses have been shown to encode functional homologs of UPS enzymes, suggesting that a...