Dittami, Simon M, Scornet, Delphine, Petit, Jean-Louis, Ségurens, Béatrice, Da Silva, Corinne, Corre, Erwan, ...
Abstract Background Brown algae (Phaeophyceae) are phylogenetically distant from red and green algae and an important component of the coastal ecosystem. They have developed unique mechanisms that...
Dittami, Simon, Scornet, Delphine, Petit, Jean-Louis, Ségurens, Béatrice, Da Silva, Corinne, Corre, Erwan, ...
Background: Brown algae (Phaeophyceae) are phylogenetically distant from red and green algae and an important component of the coastal ecosystem. They have developed unique mechanisms that allow them...
New miRNAs cloned from neuroblastoma (2008)
Afanasyeva, Elena A, Hotz-Wagenblatt, Agnes, Glatting, Karl-Heinz, Westermann, Frank
Abstract Background MicroRNAs (miRNAs) are a novel class of gene expression regulators implicated in cancer biology. Neuroblastoma (NB) is an embryonal tumour consisting of neural crest-derived...
Automatic annotation tools (2007)
Coral Del Val, Mechthild Falkenhahn, Karl-heinz Glatting, Agnes Hotz-wagenblatt, Barbara Pardon, Sndor Suhai
The aim of a high-quality annotation is to identify the key genome features- in particular, the genes and their products in order to bridge the considerable gap between large-scale data-collection...
CAFTAN: a tool for fast mapping, and quality assessment of cDNAs (2006)
Del Val, Coral, Kuryshev, Vladimir, Glatting, Karl-Heinz, Ernst, Peter, Hotz-Wagenblatt, Agnes, Poustka, Annemarie, ...
Abstract Background The German cDNA Consortium has been cloning full length cDNAs and continued with their exploitation in protein localization experiments and cellular assays. However, the efficient...
GOPET: A tool for automated predictions of Gene Ontology terms (2006)
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
Abstract Background Vast progress in sequencing projects has called for annotation on a large scale. A Number of methods have been developed to address this challenging task. These methods, however,...
The LIFEdb database in 2006 (2006)
Er Mehrle, Heiko Rosenfelder, Coral Del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, ...
LIFEdb
Bmc Bioinformatics, Coral Del Val, Vladimir Yurjevich Kuryshev, Karl-heinz Glatting, Peter Ernst, Agnes Hotz-wagenblatt, ...
Software CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
The LIFEdb database in 2006 (2006)
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb (http://www.LIFEdb.de) integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb...
Applying Support Vector Machines for Gene ontology based gene function prediction (2004)
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
Abstract Background The current progress in sequencing projects calls for rapid, reliable and accurate function assignments of gene products. A variety of methods has been designed to annotate...
Function Prediction, Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Karl-heinz Glatting, ...
This is an open-access article distributed under the terms of the Creative Commons Attribution License
High-throughput protein analysis integrating bioinformatics and experimental assays (2004)
Del Val, Coral, Mehrle, Alexander, Falkenhahn, Mechthild, Seiler, Markus, Glatting, Karl-Heinz, Poustka, Annemarie, ...
The wealth of transcript information that has been made publicly available in recent years requires the development of high‐throughput functional genomics and proteomics approaches for its...
Bannasch, Detlev, Mehrle, Alexander, Glatting, Karl-Heinz, Pepperkok, Rainer, Poustka, Annemarie, Wiemann, Stefan
We have implemented LIFEdb (http://www.dkfz.de/LIFEdb) to link information regarding novel human full‐length cDNAs generated and sequenced by the German cDNA Consortium with functional...
cDNA2Genome: A tool for mapping and annotating cDNAs (2003)
Del Val, Coral, Glatting, Karl-Heinz, Suhai, Sandor
Abstract Background In the last years several high-throughput cDNA sequencing projects have been funded worldwide with the aim of identifying and characterizing the structure of complete novel human...
Estannotator: a tool for high throughput est annotation (2003)
Agnes Hotz-wagenblatt, Thomas Hankeln, Peter Ernst, Karl-heinz Glatting, Erwin R. Schmidt, Sándor Suhai
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
ESTAnnotator: a tool for high throughput EST annotation (2003)
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
A task framework for the web interface W2H (2003)
Ernst, Peter, Glatting, Karl-Heinz, Suhai, Sándor
Summary: The W3H task framework allows the execution of compound jobs utilizing the description of work and data flows in a heterogeneous bioinformatics environment using meta-data information. By...
ESTAnnotator: a tool for high throughput EST annotation
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
Bannasch, Detlev, Mehrle, Alexander, Glatting, Karl-Heinz, Pepperkok, Rainer, Poustka, Annemarie, Wiemann, Stefan
We have implemented LIFEdb (http://www.dkfz.de/LIFEdb) to link information regarding novel human full-length cDNAs generated and sequenced by the German cDNA Consortium with functional information on...
High-throughput protein analysis integrating bioinformatics and experimental assays
Del Val, Coral, Mehrle, Alexander, Falkenhahn, Mechthild, Seiler, Markus, Glatting, Karl-Heinz, Poustka, Annemarie, ...
The wealth of transcript information that has been made publicly available in recent years requires the development of high-throughput functional genomics and proteomics approaches for its analysis....
Applying Support Vector Machines for Gene ontology based gene function prediction
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb () integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb include (i) an...
GOPET: A tool for automated predictions of Gene Ontology terms
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
Del Val, Coral, Kuryshev, Vladimir Yurjevich, Glatting, Karl-Heinz, Ernst, Peter, Hotz-Wagenblatt, Agnes, Poustka, Annemarie, ...
ESTAnnotator: a tool for high throughput EST annotation
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
Bannasch, Detlev, Mehrle, Alexander, Glatting, Karl-Heinz, Pepperkok, Rainer, Poustka, Annemarie, Wiemann, Stefan
We have implemented LIFEdb (http://www.dkfz.de/LIFEdb) to link information regarding novel human full-length cDNAs generated and sequenced by the German cDNA Consortium with functional information on...
High-throughput protein analysis integrating bioinformatics and experimental assays
Del Val, Coral, Mehrle, Alexander, Falkenhahn, Mechthild, Seiler, Markus, Glatting, Karl-Heinz, Poustka, Annemarie, ...
The wealth of transcript information that has been made publicly available in recent years requires the development of high-throughput functional genomics and proteomics approaches for its analysis....
Applying Support Vector Machines for Gene ontology based gene function prediction
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
Mehrle, Alexander, Rosenfelder, Heiko, Schupp, Ingo, Del Val, Coral, Arlt, Dorit, Hahne, Florian, ...
LIFEdb () integrates data from large-scale functional genomics assays and manual cDNA annotation with bioinformatics gene expression and protein analysis. New features of LIFEdb include (i) an...
GOPET: A tool for automated predictions of Gene Ontology terms
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
CAFTAN: a tool for fast mapping, and quality assessment of cDNAs
Del Val, Coral, Kuryshev, Vladimir Yurjevich, Glatting, Karl-Heinz, Ernst, Peter, Hotz-Wagenblatt, Agnes, Poustka, Annemarie, ...
New miRNAs cloned from neuroblastoma
Afanasyeva, Elena A, Hotz-Wagenblatt, Agnes, Glatting, Karl-Heinz, Westermann, Frank
Dittami, Simon M, Scornet, Delphine, Petit, Jean-Louis, Ségurens, Béatrice, Da Silva, Corinne, Corre, Erwan, ...
The brown alga Ectocarpus siliculosus, unlike terrestrial plants, undergoes extensive reprogramming of its transcriptome during the acclimation to mild abiotic stress.