Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa (2007)
Loscher, Carol J, Hokamp, Karsten, Kenna, Paul F, Ivens, Alasdair C, Humphries, Peter, Palfi, Arpad, ...
Abstract Background The role played by microRNAs (miRs) as common regulators in physiologic processes such as development and various disease states was recently highlighted. Retinitis pigmentosa...
Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...
Abstract Background Leucine-rich repeats (LRRs) are highly versatile and evolvable protein-ligand interaction motifs found in a large number of proteins with diverse functions, including innate...
A Recent Polyploidy Superimposed on Older Large-Scale Duplications in the Arabidopsis Genome
Blanc, Guillaume, Hokamp, Karsten, Wolfe, Kenneth H.
The Arabidopsis genome contains numerous large duplicated chromosomal segments, but the different approaches used in previous analyses led to different interpretations regarding the number and timing...
ArrayPipe: a flexible processing pipeline for microarray data
Hokamp, Karsten, Roche, Fiona M., Acab, Michael, Rousseau, Marc-Etienne, Kuo, Byron, Goode, David, ...
A number of microarray analysis software packages exist already; however, none combines the user-friendly features of a web-based interface with potential ability to analyse multiple arrays at once...
ProbeLynx: a tool for updating the association of microarray probes to genes
Roche, Fiona M., Hokamp, Karsten, Acab, Michael, Babiuk, Lorne A., Hancock, Robert E. W., Brinkman, Fiona S. L.
As genome sequence data and gene prediction improve, probes developed for a given microarray experiment should be continuously re-evaluated for their specificity for given genes....
PubCrawler: keeping up comfortably with PubMed and GenBank
Hokamp, Karsten, Wolfe, Kenneth H.
The free PubCrawler web service (http://www.pubcrawler.ie) has been operating for five years and so far has brought literature and sequence updates to over 22 000 users. It provides information on...
A Recent Polyploidy Superimposed on Older Large-Scale Duplications in the Arabidopsis Genome
Blanc, Guillaume, Hokamp, Karsten, Wolfe, Kenneth H.
The Arabidopsis genome contains numerous large duplicated chromosomal segments, but the different approaches used in previous analyses led to different interpretations regarding the number and timing...
ArrayPipe: a flexible processing pipeline for microarray data
Hokamp, Karsten, Roche, Fiona M., Acab, Michael, Rousseau, Marc-Etienne, Kuo, Byron, Goode, David, ...
A number of microarray analysis software packages exist already; however, none combines the user-friendly features of a web-based interface with potential ability to analyse multiple arrays at once...
ProbeLynx: a tool for updating the association of microarray probes to genes
Roche, Fiona M., Hokamp, Karsten, Acab, Michael, Babiuk, Lorne A., Hancock, Robert E. W., Brinkman, Fiona S. L.
As genome sequence data and gene prediction improve, probes developed for a given microarray experiment should be continuously re-evaluated for their specificity for given genes....
PubCrawler: keeping up comfortably with PubMed and GenBank
Hokamp, Karsten, Wolfe, Kenneth H.
The free PubCrawler web service (http://www.pubcrawler.ie) has been operating for five years and so far has brought literature and sequence updates to over 22 000 users. It provides information on...
Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
Loscher, Carol J, Hokamp, Karsten, Kenna, Paul F, Ivens, Alasdair C, Humphries, Peter, Palfi, Arpad, ...
MicroRNA expression profiling showed that the retina of mice carrying a rhodopsin mutation that leads to retinitis pigmentosa have notably different microRNA profiles from wildtype mice; further in...