CDD: specific functional annotation with the Conserved Domain Database (2009)
Marchler-Bauer, Aron, Anderson, John B., Chitsaz, Farideh, Derbyshire, Myra K., DeWeese-Scott, Carol, Fong, Jessica H., ...
NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The...
Database resources of the National Center for Biotechnology Information (2009)
Sayers, Eric W., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Database resources of the National Center for Biotechnology Information (2009)
Sayers, Eric W., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
Introduction DBParser: Web-Based Software for Shotgun Proteomic Data Analyses (2008)
Xiaoyu Yang, Vijay Dondeti, Rebecca Dezube, Dawn M. Maynard, Lewis Y. Geer, Jonathan Epstein, ...
Database resources of the National Center for Biotechnology Information (2008)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank...
MMDB: annotating protein sequences with Entrez's 3D-structure database (2007)
Wang, Yanli, Addess, Kenneth J., Chen, Jie, Geer, Lewis Y., He, Jane, He, Siqian, ...
Three-dimensional (3D) structure is now known for a large fraction of all protein families. Thus, it has become rather likely that one will find a homolog with known 3D structure when searching a...
Database resources of the National Center for Biotechnology Information (2007)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, ...
In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Database resources of the National Center for Biotechnology Information (2006)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Database resources of the National Center for Biotechnology Information (2006)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Database resources of the National Center for Biotechnology Information (2006)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank...
Database resources of the National Center for Biotechnology Information (2006)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Database resources of the National Center for Biotechnology Information (2006)
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
CDD: a Conserved Domain Database for protein classification (2005)
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
Open Mass Spectrometry Search Algorithm (2004)
Geer, Lewis Y., Markey, Sanford P., Kowalak, Jeffrey A., Wagner, Lukas, Xu, Ming, Maynard, Dawn M., ...
Large numbers of MS/MS peptide spectra generated in proteomics experiments require efficient, sensitive and specific algorithms for peptide identification. In the Open Mass Spectrometry Search...
doi:10.1093/nar/gki069 CDD: a Conserved Domain Database for protein (2004)
Aron Marchler-bauer, John B. Anderson, Praveen F. Cherukuri, Carol Deweese-scott, Lewis Y. Geer, Marc Gwadz, ...
classification
CDD: a curated Entrez database of conserved domain alignments (2003)
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
MMDB: Entrez's 3D-structure database (2003)
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
DOI: 10.1093/nar/gkg086 MMDB: Entrez’s 3D-structure database (2002)
Jie Chen, John B. Anderson, Carol Deweese-scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of...
MMDB: Entrez's 3D-structure database (2002)
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
CDART: Protein Homology by Domain Architecture (2002)
Geer, Lewis Y., Domrachev, Michael, Lipman, David J., Bryant, Stephen H.
MMDB: Entrez’s 3D-structure database
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
MMDB: Entrez's 3D-structure database
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
CDD: a curated Entrez database of conserved domain alignments
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
CDART: Protein Homology by Domain Architecture
Geer, Lewis Y., Domrachev, Michael, Lipman, David J., Bryant, Stephen H.
The Conserved Domain Architecture Retrieval Tool (CDART) performs similarity searches of the NCBI Entrez Protein Database based on domain architecture, defined as the sequential order of conserved...
CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
Database resources of the National Center for Biotechnology Information
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank...
MMDB: Entrez’s 3D-structure database
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
MMDB: Entrez's 3D-structure database
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
CDD: a curated Entrez database of conserved domain alignments
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
CDART: Protein Homology by Domain Architecture
Geer, Lewis Y., Domrachev, Michael, Lipman, David J., Bryant, Stephen H.
The Conserved Domain Architecture Retrieval Tool (CDART) performs similarity searches of the NCBI Entrez Protein Database based on domain architecture, defined as the sequential order of conserved...
CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
Database resources of the National Center for Biotechnology Information
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank...
MMDB: annotating protein sequences with Entrez's 3D-structure database
Wang, Yanli, Addess, Kenneth J., Chen, Jie, Geer, Lewis Y., He, Jane, He, Siqian, ...
Three-dimensional (3D) structure is now known for a large fraction of all protein families. Thus, it has become rather likely that one will find a homolog with known 3D structure when searching a...
Database resources of the National Center for Biotechnology Information
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
Chi, An, Huttenhower, Curtis, Geer, Lewis Y., Coon, Joshua J., Syka, John E. P., Bai, Dina L., ...
We present a strategy for the analysis of the yeast phosphoproteome that uses endo-Lys C as the proteolytic enzyme, immobilized metal affinity chromatography for phosphopeptide enrichment, a 90-min...
Database resources of the National Center for Biotechnology Information
Wheeler, David L., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank...
Database resources of the National Center for Biotechnology Information
Sayers, Eric W., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
Database resources of the National Center for Biotechnology Information
Sayers, Eric W., Barrett, Tanya, Benson, Dennis A., Bryant, Stephen H., Canese, Kathi, Chetvernin, Vyacheslav, ...
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and...
CDD: specific functional annotation with the Conserved Domain Database
Marchler-Bauer, Aron, Anderson, John B., Chitsaz, Farideh, Derbyshire, Myra K., DeWeese-Scott, Carol, Fong, Jessica H., ...
NCBI's Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution. The...