Shao, Peng, Yang, Jian-Hua, Zhou, Hui, Guan, Dao-Gang, Qu, Liang-Hu
Abstract Background Small nucleolar RNAs (snoRNAs) represent one of the largest groups of functionally diverse trans-acting non-protein-coding (npc) RNAs currently known in eukaryotic cells. Chicken...
Chen, Chun-Long, Zhou, Hui, Liao, Jian-You, Qu, Liang-Hu, Amar, Laurence
The compact genome of the unicellular eukaryote Paramecium tetraurelia contains noncoding DNA (ncDNA) distributed into >39,000 intergenic sequences and >90,000 introns of 390 base pairs (bp) and 25...
Li, Yan, Luo, Jun, Zhou, Hui, Liao, Jian-You, Ma, Li-Ming, Chen, Yue-Qin, ...
Giardia lamblia is an early diverging and evolutionarily successful protozoan as it can enter into a dormant cyst stage from a vegetative trophozoite. During dormant stage, its metabolic rate...
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
The Chlamydomonas genome reveals the evolution of key animal and plant functions. (2007)
Merchant, Sabeeha S., Prochnik, Simon E., Vallon, Olivier, Harris, Elizabeth H., Karpowicz, Steven J., Witman, George B., ...
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase (2005)
Li, Jian-Feng, Qu, Liang-Hu, Li, Ning
1-Aminocyclopropane-1-carboxylate (ACC) synthase is a key enzyme in the regulation of ethylene biosynthesis in higher plants. To investigate the catalytic significances of two conserved tyrosine...
Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase (2005)
Li, Jian-Feng, Qu, Liang-Hu, Li, Ning
1-Aminocyclopropane-1-carboxylate (ACC) synthase is a key enzyme in the regulation of ethylene biosynthesis in higher plants. To investigate the catalytic significances of two conserved tyrosine...
HUANG, ZHAN-PENG, ZHOU, HUI, HE, HUA-LIANG, CHEN, CHUN-LONG, LIANG, DAN, QU, LIANG-HU
Small nucleolar RNAs (snoRNAs) are an abundant group of noncoding RNAs mainly involved in the post-transcriptional modifications of rRNAs in eukaryotes. In this study, a large-scale genome-wide...
HUANG, ZHAN-PENG, ZHOU, HUI, HE, HUA-LIANG, CHEN, CHUN-LONG, LIANG, DAN, QU, LIANG-HU
Small nucleolar RNAs (snoRNAs) are an abundant group of noncoding RNAs mainly involved in the post-transcriptional modifications of rRNAs in eukaryotes. In this study, a large-scale genome-wide...
Gu, Ai-Di, Zhou, Hui, Yu, Chun-Hong, Qu, Liang-Hu
Box H/ACA snoRNAs represent an abundant group of small non-coding RNAs mainly involved in the pseudouridylation of rRNAs and/or snRNAs in eukaryotes and Archaea. In this study, we describe a novel...
Tyr152 plays a central role in the catalysis of 1-aminocyclopropane-1-carboxylate synthase (2005)
Li, Jian-Feng, Qu, Liang-Hu, Li, Ning
1-Aminocyclopropane-1-carboxylate (ACC) synthase is a key enzyme in the regulation of ethylene biosynthesis in higher plants. To investigate the catalytic significances of two conserved tyrosine...
Mitogenomic Perspectives on the Origin and Phylogeny of Living Amphibians (2005)
Zhang, Peng, Zhou, Hui, Chen, Yue-Qin, Liu, Yi-Fei, Qu, Liang-Hu
Establishing the relationships among modern amphibians (lissamphibians) and their ancient relatives is necessary for our understanding of early tetrapod evolution. However, the phylogeny is still...
Identification of 20 microRNAs from Oryza sativa (2004)
Wang, Jia-Fu, Zhou, Hui, Chen, Yue-Qin, Luo, Qing-Jun, Qu, Liang-Hu
MicroRNAs (miRNAs) are present in both plant and animal kingdoms and represents a growing family of non‐coding RNAs. These tiny RNAs act as small guides and direct negative regulations usually...
Chen, Chun-Long, Liang, Dan, Zhou, Hui, Zhuo, Min, Chen, Yue-Qin, Qu, Liang-Hu
Using a powerful computer‐assisted analysis strategy, a large‐scale search of small nucleolar RNA (snoRNA) genes in the recently released draft sequence of the rice genome was carried out....
Brown, John W. S., Echeverria, Manuel, Qu, Liang-Hu, Lowe, Todd M., Bachellerie, Jean-Pierre, Hüttenhofer, Alexander, ...
The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences,...
DOI: 10.1093/nar/gkg009 Plant snoRNA database (2002)
Manuel Echeverria, Liang-hu Qu, Todd M. Lowe, Jean-pierre Bachellerie, Er Hüttenhofer, ...
The Plant snoRNA database
A novel gene organization: intronic snoRNA gene clusters from Oryza sativa (2002)
Liang, Dan, Zhou, Hui, Zhang, Peng, Chen, Yue-Qin, Chen, Xiao, Chen, Chun-Long, ...
Based on the analysis of structural features and conserved elements, 27 novel snoRNA genes have been identified from rice. All of them belong to the C/D box‐containing snoRNA family except...
Zhou, Hui, Chen, Yue-Qin, Du, Yan-Ping, Qu, Liang-Hu
Through a computer search of DNA databases, we have identified the homologs of the mgU6-47 snoRNA gene from the yeast Schizosaccharomyces pombe, the fly Drosophila melanogaster and human. The three...
Qu, Liang-Hu, Henry, Yves, Nicoloso, Monique, Michot, Bernard, Azum, Marie-Claude, Renalier, Marie-Hélène, ...
Following computer searches of sequence banks, we have positively identified a novel Intronlc snoRNA, U24, encoded in the ribosomal protein L7a gene in humans and chicken. Like previously reported...
Qu, Liang-Hu, Nicoloso, Monigue, Bachellerie, Jean-Pierre
In humans, cellular 28S rRNA displays a sequence dimorphism within an evolutionarily conserved motif, with the presence, at position +60, of either a A (like the metazoan consensus) or a G. The...
The Schizosaccharomyces pombe mgU6-47 gene is required for 2′-O-methylation of U6 snRNA at A41
Zhou, Hui, Chen, Yue-Qin, Du, Yan-Ping, Qu, Liang-Hu
Through a computer search of DNA databases, we have identified the homologs of the mgU6-47 snoRNA gene from the yeast Schizosaccharomyces pombe, the fly Drosophila melanogaster and human. The three...
Qu, Liang-Hu, Henras, Anthony, Lu, Yong-Jun, Zhou, Hui, Zhou, Wei-xin, Zhu, Yuan-Qi, ...
Through a computer search of the genome of the yeast Saccharomyces cerevisiae, the coding sequences of seven different box C/D antisense small nucleolar RNAs (snoRNAs) with the structural hallmarks...
A novel gene organization: intronic snoRNA gene clusters from Oryza sativa
Liang, Dan, Zhou, Hui, Zhang, Peng, Chen, Yue-Qin, Chen, Xiao, Chen, Chun-Long, ...
Based on the analysis of structural features and conserved elements, 27 novel snoRNA genes have been identified from rice. All of them belong to the C/D box-containing snoRNA family except for one...
Chen, Chun-Long, Liang, Dan, Zhou, Hui, Zhuo, Min, Chen, Yue-Qin, Qu, Liang-Hu
Using a powerful computer-assisted analysis strategy, a large-scale search of small nucleolar RNA (snoRNA) genes in the recently released draft sequence of the rice genome was carried out. This...
Brown, John W. S., Echeverria, Manuel, Qu, Liang-Hu, Lowe, Todd M., Bachellerie, Jean-Pierre, Hüttenhofer, Alexander, ...
The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences,...
Identification of 20 microRNAs from Oryza sativa
Wang, Jia-Fu, Zhou, Hui, Chen, Yue-Qin, Luo, Qing-Jun, Qu, Liang-Hu
MicroRNAs (miRNAs) are present in both plant and animal kingdoms and represents a growing family of non-coding RNAs. These tiny RNAs act as small guides and direct negative regulations usually in the...
A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes
Gu, Ai-Di, Zhou, Hui, Yu, Chun-Hong, Qu, Liang-Hu
Box H/ACA snoRNAs represent an abundant group of small non-coding RNAs mainly involved in the pseudouridylation of rRNAs and/or snRNAs in eukaryotes and Archaea. In this study, we describe a novel...
HUANG, ZHAN-PENG, ZHOU, HUI, HE, HUA-LIANG, CHEN, CHUN-LONG, LIANG, DAN, QU, LIANG-HU
Small nucleolar RNAs (snoRNAs) are an abundant group of noncoding RNAs mainly involved in the post-transcriptional modifications of rRNAs in eukaryotes. In this study, a large-scale genome-wide...
Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae)
Zhang, Peng, Chen, Yue-Qin, Zhou, Hui, Liu, Yi-Fei, Wang, Xiu-Ling, Papenfuss, Theodore J., ...
We sequenced 15 complete mitochondrial genomes and performed comprehensive molecular phylogenetic analyses to study the origin and phylogeny of the Hynobiidae, an ancient lineage of living...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
The Schizosaccharomyces pombe mgU6-47 gene is required for 2′-O-methylation of U6 snRNA at A41
Zhou, Hui, Chen, Yue-Qin, Du, Yan-Ping, Qu, Liang-Hu
Through a computer search of DNA databases, we have identified the homologs of the mgU6-47 snoRNA gene from the yeast Schizosaccharomyces pombe, the fly Drosophila melanogaster and human. The three...
Qu, Liang-Hu, Henras, Anthony, Lu, Yong-Jun, Zhou, Hui, Zhou, Wei-xin, Zhu, Yuan-Qi, ...
Through a computer search of the genome of the yeast Saccharomyces cerevisiae, the coding sequences of seven different box C/D antisense small nucleolar RNAs (snoRNAs) with the structural hallmarks...
A novel gene organization: intronic snoRNA gene clusters from Oryza sativa
Liang, Dan, Zhou, Hui, Zhang, Peng, Chen, Yue-Qin, Chen, Xiao, Chen, Chun-Long, ...
Based on the analysis of structural features and conserved elements, 27 novel snoRNA genes have been identified from rice. All of them belong to the C/D box-containing snoRNA family except for one...
Chen, Chun-Long, Liang, Dan, Zhou, Hui, Zhuo, Min, Chen, Yue-Qin, Qu, Liang-Hu
Using a powerful computer-assisted analysis strategy, a large-scale search of small nucleolar RNA (snoRNA) genes in the recently released draft sequence of the rice genome was carried out. This...
Brown, John W. S., Echeverria, Manuel, Qu, Liang-Hu, Lowe, Todd M., Bachellerie, Jean-Pierre, Hüttenhofer, Alexander, ...
The Plant snoRNA database (http://www.scri.sari.ac.uk/plant_snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences,...
Identification of 20 microRNAs from Oryza sativa
Wang, Jia-Fu, Zhou, Hui, Chen, Yue-Qin, Luo, Qing-Jun, Qu, Liang-Hu
MicroRNAs (miRNAs) are present in both plant and animal kingdoms and represents a growing family of non-coding RNAs. These tiny RNAs act as small guides and direct negative regulations usually in the...
A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes
Gu, Ai-Di, Zhou, Hui, Yu, Chun-Hong, Qu, Liang-Hu
Box H/ACA snoRNAs represent an abundant group of small non-coding RNAs mainly involved in the pseudouridylation of rRNAs and/or snRNAs in eukaryotes and Archaea. In this study, we describe a novel...
HUANG, ZHAN-PENG, ZHOU, HUI, HE, HUA-LIANG, CHEN, CHUN-LONG, LIANG, DAN, QU, LIANG-HU
Small nucleolar RNAs (snoRNAs) are an abundant group of noncoding RNAs mainly involved in the post-transcriptional modifications of rRNAs in eukaryotes. In this study, a large-scale genome-wide...
Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae)
Zhang, Peng, Chen, Yue-Qin, Zhou, Hui, Liu, Yi-Fei, Wang, Xiu-Ling, Papenfuss, Theodore J., ...
We sequenced 15 complete mitochondrial genomes and performed comprehensive molecular phylogenetic analyses to study the origin and phylogeny of the Hynobiidae, an ancient lineage of living...
Yang, Jian-Hua, Zhang, Xiao-Chen, Huang, Zhan-Peng, Zhou, Hui, Huang, Mian-Bo, Zhang, Shu, ...
Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense...
Chen, Chun-Long, Chen, Chong-Jian, Vallon, Olivier, Huang, Zhan-Peng, Zhou, Hui, Qu, Liang-Hu
Chlamydomonas reinhardtii is a unicellular green alga, the lineage of which diverged from that of land plants >1 billion years ago. Using the powerful small nucleolar RNA (snoRNA) mining platform to...
Li, Yan, Luo, Jun, Zhou, Hui, Liao, Jian-You, Ma, Li-Ming, Chen, Yue-Qin, ...
Giardia lamblia is an early diverging and evolutionarily successful protozoan as it can enter into a dormant cyst stage from a vegetative trophozoite. During dormant stage, its metabolic rate...
Chen, Chun-Long, Zhou, Hui, Liao, Jian-You, Qu, Liang-Hu, Amar, Laurence
The compact genome of the unicellular eukaryote Paramecium tetraurelia contains noncoding DNA (ncDNA) distributed into >39,000 intergenic sequences and >90,000 introns of 390 base pairs (bp) and 25...