Martinez, Natalia J., Ow, Maria C., Barrasa, M. Inmaculada, Hammell, Molly, Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
MicroRNAs (miRNAs) and transcription factors (TFs) are primary metazoan gene regulators. Whereas much attention has focused on finding the targets of both miRNAs and TFs, the transcriptional networks...
Martinez, Natalia J., Ow, Maria C., Barrasa, M. Inmaculada, Hammell, Molly, Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
MicroRNAs (miRNAs) and transcription factors (TFs) are primary metazoan gene regulators. Whereas much attention has focused on finding the targets of both miRNAs and TFs, the transcriptional networks...
Multiplex Sequencing of 1.5 Mb of the Mycobacterium leprae Genome (2007)
Douglas R. Smith, Peter Richterich, Marc Rubenfield, Philip W. Rice, Kathleen Falls, Joan Imrich, ...
The nucleotide sequence of 1.5 Mb of genomic DNA from Mycobacterium leprae was determined using computer-assisted multiplex sequencing technology. This brings the 2.8-Mb M. leprae genome sequence to...
Vermeirssen, Vanessa, Barrasa, M. Inmaculada, Hidalgo, César A., Babon, Jenny Aurielle B., Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
Transcription regulatory networks play a pivotal role in the development, function, and pathology of metazoan organisms. Such networks are comprised of protein–DNA interactions between...
Vermeirssen, Vanessa, Deplancke, Bart, Barrasa, M. Inmaculada, Reece-Hoyes, John S., Arda, H. Efsun, Grove, Christian A., ...
Yeast one-hybrid (Y1H) assays provide a gene-centered method for the identification of interactions between gene promoters and regulatory transcription factors (TFs). To date, Y1H assays have...
Vermeirssen, Vanessa, Deplancke, Bart, Barrasa, M. Inmaculada, Reece-Hoyes, John S., Arda, H. Efsun, Grove, Christian A., ...
Yeast one-hybrid (Y1H) assays provide a gene-centered method for the identification of interactions between gene promoters and regulatory transcription factors (TFs). To date, Y1H assays have...
Vermeirssen, Vanessa, Barrasa, M. Inmaculada, Hidalgo, Cesar A., Babon, Jenny Aurielle B., Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
Transcription regulatory networks play a pivotal role in the development, function, and pathology of metazoan organisms. Such networks are comprised of protein-DNA interactions between transcription...
A gene-centered C. elegans protein-DNA interaction network (2006)
Deplancke, Bart, Mukhopadhyay, Arnab, Ao, Wanyuan, Elewa, Ahmed M., Grove, Christian A., Martinez, Natalia J., ...
Transcription regulatory networks consist of physical and functional interactions between transcription factors (TFs) and their target genes. The systematic mapping of TF-target gene interactions has...
Academia-Industry Collaboration: An Integral Element for Building "Omic" Resources (2004)
Hill, David E., Brasch, Michael A., Del Campo, Anthony A., Doucette-Stamm, Lynn, Garrels, James I., Glaven, Judith, ...
Lamesch, Philippe, Milstein, Stuart, Hao, Tong, Rosenberg, Jennifer, Li, Ning, Sequerra, Reynaldo, ...
The first version of the Caenorhabditis elegans ORFeome cloning project, based on release WS9 of Wormbase (August 1999), provided experimental verifications for ∼55% of predicted protein-encoding...
Human ORFeome Version 1.1: A Platform for Reverse Proteomics (2004)
Rual, Jean-François, Hirozane-Kishikawa, Tomoko, Hao, Tong, Bertin, Nicolas, Li, Siming, Dricot, Amélie, ...
The advent of systems biology necessitates the cloning of nearly entire sets of protein-encoding open reading frames (ORFs), or ORFeomes, to allow functional studies of the corresponding proteomes....
A First Version of the Caenorhabditis elegans Promoterome (2004)
Dupuy, Denis, Li, Qian-Ru, Deplancke, Bart, Boxem, Mike, Hao, Tong, Lamesch, Philippe, ...
An important aspect of the development of systems biology approaches in metazoans is the characterization of expression patterns of nearly all genes predicted from genome sequences. Such...
Generation of the Brucella melitensis ORFeome Version 1.1 (2004)
Dricot, Amélie, Rual, Jean-François, Lamesch, Philippe, Bertin, Nicolas, Dupuy, Denis, Hao, Tong, ...
The bacteria of the Brucella genus are responsible for a worldwide zoonosis called brucellosis. They belong to the α-proteobacteria group, as many other bacteria that live in close association with...
Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica (2004)
Malek, Joel A., Wierzbowski, Jamey M., Tao, Wei, Bosak, Stephanie A., Saranga, David J., Doucette-Stamm, Lynn, ...
Protein interaction maps can reveal novel pathways and functional complexes, allowing ‘guilt by association’ annotation of uncharacterized proteins. To address the need for large‐scale...
Exo-Proofreading, A Versatile SNP Scoring Technology (2003)
Cahill, Patrick, Bakis, Michele, Hurley, James, Kamath, Veena, Nielsen, William, Weymouth, Dina, ...
We report the validation of a new assay for typing single nucleotide polymorphisms (SNPs) that takes advantage of the 3′-to-5′ exonuclease proofreading activity of many DNA polymerases. The assay...
Exo-Proofreading, A Versatile SNP Scoring Technology (2003)
Cahill, Patrick, Bakis, Michele, Hurley, James, Kamath, Veena, Nielsen, William, Weymouth, Dina, ...
Jörk Nölling, Gary Breton, Marina V. Omelchenko, Kira S. Makarova, Qiandong Zeng, Rene Gibson, ...
The genome sequence of the solvent-producing bacterium Clostridium acetobutylicum ATCC 824 has been determined by the shotgun approach. The genome consists of a 3.94-Mb chromosome and a 192-kb...
Multiplex Sequencing of 1.5 Mb of the Mycobacterium leprae Genome (1997)
Smith, Douglas R., Richterich, Peter, Rubenfield, Marc, Rice, Philip W., Butler, Carol, Lee, Hong-Mei, ...
Nölling, Jörk, Breton, Gary, Omelchenko, Marina V., Makarova, Kira S., Zeng, Qiandong, Gibson, Rene, ...
The genome sequence of the solvent-producing bacterium Clostridium acetobutylicum ATCC 824 has been determined by the shotgun approach. The genome consists of a 3.94-Mb chromosome and a 192-kb...
Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica
Malek, Joel A., Wierzbowski, Jamey M., Tao, Wei, Bosak, Stephanie A., Saranga, David J., Doucette-Stamm, Lynn, ...
Protein interaction maps can reveal novel pathways and functional complexes, allowing ‘guilt by association’ annotation of uncharacterized proteins. To address the need for large-scale protein...
Exo-Proofreading, A Versatile SNP Scoring Technology
Cahill, Patrick, Bakis, Michele, Hurley, James, Kamath, Veena, Nielsen, William, Weymouth, Dina, ...
We report the validation of a new assay for typing single nucleotide polymorphisms (SNPs) that takes advantage of the 3′-to-5′ exonuclease proofreading activity of many DNA polymerases. The assay...
Lamesch, Philippe, Milstein, Stuart, Hao, Tong, Rosenberg, Jennifer, Li, Ning, Sequerra, Reynaldo, ...
The first version of the Caenorhabditis elegans ORFeome cloning project, based on release WS9 of Wormbase (August 1999), provided experimental verifications for ∼55% of predicted protein-encoding...
Human ORFeome Version 1.1: A Platform for Reverse Proteomics
Rual, Jean-François, Hirozane-Kishikawa, Tomoko, Hao, Tong, Bertin, Nicolas, Li, Siming, Dricot, Amélie, ...
The advent of systems biology necessitates the cloning of nearly entire sets of protein-encoding open reading frames (ORFs), or ORFeomes, to allow functional studies of the corresponding proteomes....
A First Version of the Caenorhabditis elegans Promoterome
Dupuy, Denis, Li, Qian-Ru, Deplancke, Bart, Boxem, Mike, Hao, Tong, Lamesch, Philippe, ...
An important aspect of the development of systems biology approaches in metazoans is the characterization of expression patterns of nearly all genes predicted from genome sequences. Such...
Generation of the Brucella melitensis ORFeome Version 1.1
Dricot, Amélie, Rual, Jean-François, Lamesch, Philippe, Bertin, Nicolas, Dupuy, Denis, Hao, Tong, ...
The bacteria of the Brucella genus are responsible for a worldwide zoonosis called brucellosis. They belong to the α-proteobacteria group, as many other bacteria that live in close association with...
A protein–protein interaction map of the Caenorhabditis elegans 26S proteasome
Davy, Anne, Bello, Paul, Thierry-Mieg, Nicolas, Vaglio, Philippe, Hitti, Joseph, Doucette-Stamm, Lynn, ...
The ubiquitin-proteasome proteolytic pathway is pivotal in most biological processes. Despite a great level of information available for the eukaryotic 26S proteasome—the protease responsible for...
Nölling, Jörk, Breton, Gary, Omelchenko, Marina V., Makarova, Kira S., Zeng, Qiandong, Gibson, Rene, ...
The genome sequence of the solvent-producing bacterium Clostridium acetobutylicum ATCC 824 has been determined by the shotgun approach. The genome consists of a 3.94-Mb chromosome and a 192-kb...
Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica
Malek, Joel A., Wierzbowski, Jamey M., Tao, Wei, Bosak, Stephanie A., Saranga, David J., Doucette-Stamm, Lynn, ...
Protein interaction maps can reveal novel pathways and functional complexes, allowing ‘guilt by association’ annotation of uncharacterized proteins. To address the need for large-scale protein...
Exo-Proofreading, A Versatile SNP Scoring Technology
Cahill, Patrick, Bakis, Michele, Hurley, James, Kamath, Veena, Nielsen, William, Weymouth, Dina, ...
We report the validation of a new assay for typing single nucleotide polymorphisms (SNPs) that takes advantage of the 3′-to-5′ exonuclease proofreading activity of many DNA polymerases. The assay...
Lamesch, Philippe, Milstein, Stuart, Hao, Tong, Rosenberg, Jennifer, Li, Ning, Sequerra, Reynaldo, ...
The first version of the Caenorhabditis elegans ORFeome cloning project, based on release WS9 of Wormbase (August 1999), provided experimental verifications for ∼55% of predicted protein-encoding...
Human ORFeome Version 1.1: A Platform for Reverse Proteomics
Rual, Jean-François, Hirozane-Kishikawa, Tomoko, Hao, Tong, Bertin, Nicolas, Li, Siming, Dricot, Amélie, ...
The advent of systems biology necessitates the cloning of nearly entire sets of protein-encoding open reading frames (ORFs), or ORFeomes, to allow functional studies of the corresponding proteomes....
A First Version of the Caenorhabditis elegans Promoterome
Dupuy, Denis, Li, Qian-Ru, Deplancke, Bart, Boxem, Mike, Hao, Tong, Lamesch, Philippe, ...
An important aspect of the development of systems biology approaches in metazoans is the characterization of expression patterns of nearly all genes predicted from genome sequences. Such...
Generation of the Brucella melitensis ORFeome Version 1.1
Dricot, Amélie, Rual, Jean-François, Lamesch, Philippe, Bertin, Nicolas, Dupuy, Denis, Hao, Tong, ...
The bacteria of the Brucella genus are responsible for a worldwide zoonosis called brucellosis. They belong to the α-proteobacteria group, as many other bacteria that live in close association with...
A protein–protein interaction map of the Caenorhabditis elegans 26S proteasome
Davy, Anne, Bello, Paul, Thierry-Mieg, Nicolas, Vaglio, Philippe, Hitti, Joseph, Doucette-Stamm, Lynn, ...
The ubiquitin-proteasome proteolytic pathway is pivotal in most biological processes. Despite a great level of information available for the eukaryotic 26S proteasome—the protease responsible for...
Vermeirssen, Vanessa, Barrasa, M. Inmaculada, Hidalgo, César A., Babon, Jenny Aurielle B., Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
Transcription regulatory networks play a pivotal role in the development, function, and pathology of metazoan organisms. Such networks are comprised of protein–DNA interactions between...
Martinez, Natalia J., Ow, Maria C., Barrasa, M. Inmaculada, Hammell, Molly, Sequerra, Reynaldo, Doucette-Stamm, Lynn, ...
MicroRNAs (miRNAs) and transcription factors (TFs) are primary metazoan gene regulators. Whereas much attention has focused on finding the targets of both miRNAs and TFs, the transcriptional networks...