Hu, Guangan, Llinás, Manuel, Li, Jingguang, Preiser, Peter, Bozdech, Zbynek
Abstract Background The design of long oligonucleotides for spotted DNA microarrays requires detailed attention to ensure their optimal performance in the hybridization process. The main challenge is...
BMC Bioinformatics BioMed Central Methodology article (2006)
Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser, Zbynek Bozdech, Peter Rainer Preiser, ...
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains (2006)
Llinás, Manuel, Bozdech, Zbynek, Wong, Edith D., Adai, Alex T., DeRisi, Joseph L.
Gene expression patterns have been demonstrated to be highly variable between similar cell types, for example lab strains and wild strains of Saccharomyces cerevisiae cultured under identical growth...
The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum (2003)
Zbynek Bozdech, Manuel Llinás, Brian Lee Pulliam, Edith D. Wong, Jingchun Zhu, Joseph L. DeRisi
A tight cascade of gene regulation during the lifecycle of the malaria parasite in human blood cells suggests new functions for many Plasmodium genes.
The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum (2003)
Zbynek Bozdech, Manuel Llinás, Brian Lee Pulliam, Edith D. Wong, Jingchun Zhu, Joseph L. DeRisi
Plasmodium falciparum is the causative agent of the most burdensome form of human malaria, affecting 200–300 million individuals per year worldwide. The recently sequenced genome of P. falciparum...
The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum
Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L
Plasmodium falciparum is the causative agent of the most burdensome form of human malaria, affecting 200–300 million individuals per year worldwide. The recently sequenced genome of P. falciparum...
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae
Galgoczy, David J., Cassidy-Stone, Ann, Llinás, Manuel, O'Rourke, Sean M., Herskowitz, Ira, DeRisi, Joseph L., ...
The budding yeast Saccharomyces cerevisiae has three cell types (a cells, α cells, and a/α cells), each of which is specified by a unique combination of transcriptional regulators. This...
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
Llinás, Manuel, Bozdech, Zbynek, Wong, Edith D., Adai, Alex T., DeRisi, Joseph L.
Gene expression patterns have been demonstrated to be highly variable between similar cell types, for example lab strains and wild strains of Saccharomyces cerevisiae cultured under identical growth...
The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum
Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L
Plasmodium falciparum is the causative agent of the most burdensome form of human malaria, affecting 200–300 million individuals per year worldwide. The recently sequenced genome of P. falciparum...
Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae
Galgoczy, David J., Cassidy-Stone, Ann, Llinás, Manuel, O'Rourke, Sean M., Herskowitz, Ira, DeRisi, Joseph L., ...
The budding yeast Saccharomyces cerevisiae has three cell types (a cells, α cells, and a/α cells), each of which is specified by a unique combination of transcriptional regulators. This...
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
Llinás, Manuel, Bozdech, Zbynek, Wong, Edith D., Adai, Alex T., DeRisi, Joseph L.
Gene expression patterns have been demonstrated to be highly variable between similar cell types, for example lab strains and wild strains of Saccharomyces cerevisiae cultured under identical growth...
Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy
Hu, Guangan, Llinás, Manuel, Li, Jingguang, Preiser, Peter Rainer, Bozdech, Zbynek
Tamez, Pamela A., Bhattacharjee, Souvik, Van Ooij, Christiaan, Hiller, N. Luisa, Llinás, Manuel, Balu, Bharath, ...
Plasmodium falciparum is the protozoan parasite that causes the most virulent of human malarias. The blood stage parasites export several hundred proteins into their host erythrocyte that underlie...
Specific DNA-binding by Apicomplexan AP2 transcription factors
De Silva, Erandi K., Gehrke, Andrew R., Olszewski, Kellen, León, Ilsa, Chahal, Jasdave S., Bulyk, Martha L., ...
Malaria remains one of the most prevalent infectious diseases worldwide, affecting more than half a billion people annually. Despite many years of research, the mechanisms underlying transcriptional...