Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...
From DNA sequence analysis to modeling replication in the human genome (2007)
Brodie, Edward-Benedict, Nicolay, Samuel, Touchon, Marie, Audit, Benjamin, D'Aubenton-Carafa, Yves, Thermes, Claude, ...
We explore the large-scale behavior of nucleotide compositional strand asymmetries along human chromosomes. As we observe for 7 of 9 origins of replication experimentally identified so far, the...
Human gene organization driven by the coordination of replication and transcription (2007)
Huvet, Maxime, Nicolay, Samuel, Touchon, Marie, Audit, Benjamin, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In this work, we investigated a large-scale organization of the human genes with respect to putative replication origins. We developed an appropriate multiscale method to analyze the nucleotide...
Causes of Insertion Sequences Abundance in Prokaryotic Genomes (2007)
Touchon, Marie, Rocha, Eduardo PC
Insertion sequences (ISs) are the smallest and most frequent transposable elements in prokaryotes where they play an important evolutionary role by promoting gene inactivation and genome plasticity....
Similar compositional biases are caused by very different mutational effects (2006)
Rocha, Eduardo P.C., Touchon, Marie, Feil, Edward J.
Compositional replication strand bias, commonly referred to as GC skew, is present in many genomes of prokaryotes, eukaryotes, and viruses. Although cytosine deamination in ssDNA (resulting in C→T...
Similar compositional biases are caused by very different mutational effects (2006)
Rocha, Eduardo P.C., Touchon, Marie, Feil, Edward J.
Compositional replication strand bias, commonly referred to as GC skew, is present in many genomes of prokaryotes, eukaryotes, and viruses. Although cytosine deamination in ssDNA (resulting in C→T...
Touchon, Marie, Nicolay, Samuel, Audit, Benjamin, Brodie (of Brodie), Edward-Benedict, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In the course of evolution, mutations do not affect both strands of genomic DNA equally. This imbalance mainly results from asymmetric DNA mutation and repair processes associated with replication...
From DNA sequence analysis to modeling replication in the human genome. (2005)
Brodie (of Brodie), Edward-Benedict, Nicolay, Samuel, Touchon, Marie, Audit, Benjamin, D'Aubenton-Carafa, Yves, Thermes, Claude, ...
We explore the large-scale behavior of nucleotide compositional strand asymmetries along human chromosomes. As we observe for 7 of 9 origins of replication experimentally identified so far, the...
Touchon, Marie, Nicolay, Samuel, Audit, Benjamin, Brodie (of Brodie), Edward-Benedict, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In the course of evolution, mutations do not affect both strands of genomic DNA equally. This imbalance mainly results from asymmetric DNA mutation and repair processes associated with replication...
From DNA sequence analysis to modeling replication in the human genome. (2005)
Brodie (of Brodie), Edward-Benedict, Nicolay, Samuel, Touchon, Marie, Audit, Benjamin, D'Aubenton-Carafa, Yves, Thermes, Claude, ...
We explore the large-scale behavior of nucleotide compositional strand asymmetries along human chromosomes. As we observe for 7 of 9 origins of replication experimentally identified so far, the...
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes (2004)
Touchon, Marie, Arneodo, Alain, D'Aubenton-Carafa, Yves, Thermes, Claude
Under no-strand bias conditions, each genomic DNA strand should present equimolarities of A and T and of G and C. Deviations from these rules are attributed to asymmetric properties intrinsic to DNA...
Arneodo, Alain, Argoul, Francoise, Audit, Benjamin, Nicolay, Samuel, Brodie, Edward-Benedict, Vaillant, Cedric, ...
See also ADM001750. Wavelets and Multifractal Analysis (WAMA) Workshop held on 19-31 July 2004. The original document contains color images. Prepared in cooperation with EPF, Lausanne, Switerzland...
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
Touchon, Marie, Arneodo, Alain, D'Aubenton-Carafa, Yves, Thermes, Claude
Under no-strand bias conditions, each genomic DNA strand should present equimolarities of A and T and of G and C. Deviations from these rules are attributed to asymmetric properties intrinsic to DNA...
Touchon, Marie, Nicolay, Samuel, Audit, Benjamin, Brodie Of Brodie, Edward-Benedict, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In the course of evolution, mutations do not affect both strands of genomic DNA equally. This imbalance mainly results from asymmetric DNA mutation and repair processes associated with replication...
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
Touchon, Marie, Arneodo, Alain, D'Aubenton-Carafa, Yves, Thermes, Claude
Under no-strand bias conditions, each genomic DNA strand should present equimolarities of A and T and of G and C. Deviations from these rules are attributed to asymmetric properties intrinsic to DNA...
Touchon, Marie, Nicolay, Samuel, Audit, Benjamin, Brodie Of Brodie, Edward-Benedict, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In the course of evolution, mutations do not affect both strands of genomic DNA equally. This imbalance mainly results from asymmetric DNA mutation and repair processes associated with replication...
Similar compositional biases are caused by very different mutational effects
Rocha, Eduardo P.C., Touchon, Marie, Feil, Edward J.
Compositional replication strand bias, commonly referred to as GC skew, is present in many genomes of prokaryotes, eukaryotes, and viruses. Although cytosine deamination in ssDNA (resulting in C→T...
Human gene organization driven by the coordination of replication and transcription
Huvet, Maxime, Nicolay, Samuel, Touchon, Marie, Audit, Benjamin, D'Aubenton-Carafa, Yves, Arneodo, Alain, ...
In this work, we investigated a large-scale organization of the human genes with respect to putative replication origins. We developed an appropriate multiscale method to analyze the nucleotide...
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, ...
The Escherichia coli species represents one of the best-studied model organisms, but also encompasses a variety of commensal and pathogenic strains that diversify by high rates of genetic change. We...