An analytical pipeline for genomic representations used for cytosine methylation studies (2008)
Thompson, Reid F., Reimers, Mark, Khulan, Batbayar, Gissot, Mathieu, Richmond, Todd A., Chen, Quan, ...
Motivation: Representations of the genome can be generated by the selection of a subpopulation of restriction fragments using ligation-mediated PCR. Such representations form the basis for a number...
Clonal Mosaic Model for the Synthesis of Mammalian Coat Patterns (2007)
Accepted For Graphics, Marcelo Walter, Alain Fournier, Mark Reimers
We introduce the Clonal Mosaic (CM) model for the synthesis of mammalian coat patterns, present its implementation for modeling and display purposes, and give a few examples of generated patterns....
Eichler, Gabriel S, Reimers, Mark, Kane, David, Weinstein, John N
Abstract Interpretation of microarray data remains a challenge, and most methods fail to consider the complex, nonlinear regulation of gene expression. To address that limitation, we introduce...
Danielle Kemmer, Margareta Faxén, Emily Hodges, Jonathan Lim, Elena Herzog, Elsebrit Ljungström, ...
In this paper we aim to create a reference data collection of Northern blot results and demonstrate how such a collection can enable a quantitative comparison of modern expression profiling...
Zeeberg, Barry R, Qin, Haiying, Narasimhan, Sudarshan, Sunshine, Margot, Cao, Hong, Kane, David W, ...
Abstract Background We previously developed GoMiner, an application that organizes lists of 'interesting' genes (for example, under-and overexpressed genes from a microarray experiment) for...
Reimers, Mark, Weinstein, John N
Abstract Background Quality-control is an important issue in the analysis of gene expression microarrays. One type of problem is regional bias, in which one region of a chip shows artifactually high...
Mark Reimers, John N Weinstein, Mark Reimers, John N Weinstein
Background: Quality-control is an important issue in the analysis of gene expression microarrays. One type of problem is regional bias, in which one region of a chip shows artifactually high or low...
Danielle Kemmer, Margareta Faxén, Emily Hodges, Jonathan Lim, Elena Herzog, Elsebrit Ljungström, ...
In this paper we aim to create a reference data collection of Northern blot results and demonstrate how such a collection can enable a quantitative comparison of modern expression profiling...
Clonal Mosaic Model for the Synthesis of Mammalian Coat Patterns (1998)
Marcelo Walter, Alain Fournier, Mark Reimers
We introduce the Clonal Mosaic (CM) model for the synthesis of mammalian coat patterns, present its implementation for modeling and display purposes, and give a few examples of generated patterns....
Zeeberg, Barry R, Qin, Haiying, Narasimhan, Sudarshan, Sunshine, Margot, Cao, Hong, Kane, David W, ...
Zeeberg, Barry R, Qin, Haiying, Narasimhan, Sudarshan, Sunshine, Margot, Cao, Hong, Kane, David W, ...
An Integrative Genomic and Epigenomic Approach for the Study of Transcriptional Regulation
Figueroa, Maria E., Reimers, Mark, Thompson, Reid F., Ye, Kenny, Li, Yushan, Selzer, Rebecca R., ...
The molecular heterogeneity of acute leukemias and other tumors constitutes a major obstacle towards understanding disease pathogenesis and developing new targeted-therapies. Aberrant gene regulation...
Eichler, Gabriel S, Reimers, Mark, Kane, David, Weinstein, John N
The LeFE algorithm has been developed to address the complex, non-linear regulation of gene expression.
Kemmer, Danielle, Faxén, Margareta, Hodges, Emily, Lim, Jonathan, Herzog, Elena, Ljungström, Elsebrit, ...
In this paper we aim to create a reference data collection of Northern blot results and demonstrate how such a collection can enable a quantitative comparison of modern expression profiling...