Field Array Compression in Data Caches for Dynamically Allocated Recursive Data Structures (2008)
Abstract. We introduce a software/hardware scheme called the Field Array Compression Technique (FACT) which reduces cache misses caused by recursive data structures. Using a data layout...
Compression in Data Caches with Compressible Field Isolation for Recursive Data Structures (2008)
Abstract. We introduce a software/hardware scheme called the Field Array Compression Technique (FACT) which reduces cache misses due to recursive data structures. Using a data layout transformation,...
The N-terminal half-domain of the long form of tRNase Z is required for the RNase 65 activity (2004)
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Transfer RNA (tRNA) 3′ processing endoribonuclease (tRNase Z) is an enzyme responsible for the removal of a 3′ trailer from pre-tRNA. There exists two types of tRNase Z: one is a short form...
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Mammalian tRNase ZL shows versatility in substrate recognition. This enzyme can not only process pre-tRNAs by cleaving off their 3′ trailer sequences, but also recognize and cleave pre-tRNA-like...
A candidate prostate cancer susceptibility gene encodes tRNA 3' processing endoribonuclease (2003)
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
tRNA 3′ processing endoribonuclease (3′ tRNase) is an enzyme responsible for the removal of a 3′ trailer from precursor tRNA (pre‐tRNA). We purified ∼85 kDa 3′ tRNase from pig liver...
Lee, Haeng-Seog, Miyauchi, Keisuke, Nagata, Yuji, Fukuda, Ryouichi, Sasagawa, Shin-ichi, Endoh, Hideki, ...
To screen a wide variety of chemicals for endocrine disrupters, and to develop an effective microbial degradation system for them, a good system is needed for the rapid and accurate evaluation of the...
Fujiwara, Makoto, Ichinomiya, Masayuki, Motoyama, Takayuki, Horiuchi, Hiroyuki, Ohta, Akinori, Takagi, Masamichi
Although many chitin synthase genes have been identified in a broad range of fungal species, there have been only a few reports about their role in fungal morphogenesis. In most cases, single gene...
Zhang, Lei, Ohta, Akinori, Takagi, Masamichi, Imai, Ryozo
To study functions of late embryogenesis abundant (LEA) proteins, which accumulate in plant cells under water deficit conditions, in vivo functional analyses were carried out using a yeast...
Zimmer, Thomas, Ogura, Atsushi, Ohta, Akinori, Takagi, Masamichi
Using the mRNA differential display technique and Western blot analysis, the present study demonstrates that induction of KAR2 occurs when misfolded membrane-bound cytochrome P450, mutated in its...
Min-Seek, Rho, Kawamata, Yuji, Nakamura, Hidemitsu, Ohta, Akinori, Takagi, Masamichi
Sacchammyces cerevisiae mutants that were unable to utilize extracellular ethanolamine for phosphatidylethanolamine synthesis were isolated. Two of them carried recessive chromosomal mutations in a...
Chung, Kyung, Lee, Sang Yeb, Ito, Toru, Tanaka, Hiroshi, Nam, Hong Gil, Takagi, Masamichi
To characterize the molecular structure of the S alleles in Lycopersicon peruvianum, we isolated two genomic fragments that corresponded to cDNAs for S11 and S12 RNases from a genomic library of a...
Irie, Masachika, Ohgi, Kazuko, Watanabe, Hideaki, Iwama, Masanori, Nakamura, Kazuo T., Kurihara, Hiroyuki, ...
In order to elucidate the mechanism of action of Rhizopus niveus RNase Rh, we investigated the pH profiles of the kinetic parameters of RNase RNAP Rh, a derivative of RNase Rh, and its mutant...
Role of Asp51 and GlulO5 in the Enzymatic Activity of a Ribonuclease from Rhizopus niveus (1993)
Ohgi, Kazuko, Horiuchi, Hiroyuki, Watanabe, Hideaki, Iwama, Masanori, Takagi, Masamichi, Irie, Masachika
The active site of a base non-specific RNase from Rhizopus niveus (RNase Rh), consists of three histidine residues and one carboxyl group [Ohgi, K. et al. (1992) J. Biochem. 111, 132–138]. In order...
Ohgi, Kazuko, Horiuchi, Hiroyuki, Watanabe, Hideaki, Iwama, Masanori, Takagi, Masamichi, Irie, Masachika
In order to study the structure-function relationship of an RNase T2 family enzyme, RNase Rh, from Rhizopus niveus, we investigated the roles of three histidine residues by means of site-specific...
Ohgi, Kazuko, Horiuchi, Hiroyuki, Watanabe, Hideaki, Takagi, Masamichi, Yano, Keiji, Irie, Masachika
The full-length cDNA encoding RNase Rh, which is secreted extracellularly by Rhizopus niveus, was isolated and its nucleotide sequence was determined. It was placed under control of the promoter of...
Primary Structure of a Base Non-Specific Ribonuclease from Rhizopus niveus (1988)
Horiuchi, Hiroyuki, Yanai, Koji, Takagi, Masamichi, Yano, Keiji, Wakabayashi, Eiji, Sanda, Akihiro, ...
The primary structure of a base non-specific ribonuclease from Rhizopus niveus (RNase Rh) was determined by nucleotide sequence analysis of the DNA fragment encoding RNase Rh gene including signal...
A new restriction endonudease from Spirulina platensis (1986)
Kawamura, Masahide, Sakakibara, Masaki, Watanabe, Teruo, Kita, Keiko, Hiraoka, Nobutsugu, Obayashi, Akira, ...
Three restriction endonucleases, SplI, SplII and SplIII have been purified partially from Spirulina platensis subspecies sjampse and named. SplI cleaves bacteriophage lambda DNA at one site, phi X...
To assess the effect of alteration of membrane structure on the enzymic activities related to phospholipid synthesis in microsomal membrane, the effects of several organic solvents have been studied...
Using an in vitro polysome-membrane binding system from rat liver developed by us, the effect of structural alteration of the microsomal membrane on its polysome-binding capacity was examined....
TAKAGI, Masamichi, HOAGLAND, Mahlon B.
A simple reaction system was developed to examine the binding of polysomes to membranes of the endoplasmic reticulum and to investigate the fate of ribosomes and nascent chains during protein...
TAKAGI, Masamichi, INOUE, Tadashi, UMEMURA, Yasukiyo
RNA was extracted from polysomes of rat liver by SDS-phenol method in the presence of bentonite and analyzed by polyacrylamide gel electrophoresis. When the gel concentration of 3.1% was used,...
Horiuchi, Hiroyuki, Fujiwara, Makoto, Yamashita, Shuichi, Ohta, Akinori, Takagi, Masamichi
We have found that the Aspergillus nidulans csmA gene encodes a novel protein which consists of an N-terminal myosin motor-like domain and a C-terminal chitin synthase domain (M. Fujiwara, H....
Nagata, Yuji, Futamura, Akiko, Miyauchi, Keisuke, Takagi, Masamichi
γ-Hexachlorocyclohexane (γ-HCH) is one of several highly chlorinated insecticides that cause serious environmental problems. The cellular proteins of a γ-HCH-degrading bacterium, Sphingomonas...
Miyauchi, Keisuke, Adachi, Yugo, Nagata, Yuji, Takagi, Masamichi
Sphingomonas (formerly Pseudomonas) paucimobilis UT26 utilizes γ-hexachlorocyclohexane (γ-HCH), a halogenated organic insecticide, as a sole source of carbon and energy. In a previous study, we...
Miyauchi, Keisuke, Suh, Seug-Kyo, Nagata, Yuji, Takagi, Masamichi
Sphingomonas (formerly Pseudomonas) paucimobilis UT26 utilizes γ-hexachlorocyclohexane (γ-HCH), a halogenated organic insecticide, as a sole carbon and energy source. In a previous study, we showed...
Nakazawa, Takanobu, Horiuchi, Hiroyuki, Ohta, Akinori, Takagi, Masamichi
Additional copies of the centromeric DNA (CEN) region induce pseudohyphal growth in a dimorphic yeast, Candida maltosa (T. Nakazawa, T. Motoyama, H. Horiuchi, A. Ohta, and M. Takagi, J. Bacteriol....
Miyauchi, Keisuke, Lee, Haeng-Seog, Fukuda, Masao, Takagi, Masamichi, Nagata, Yuji
In Sphingomonas paucimobilis UT26, LinD and LinE activities, which are responsible for the degradation of γ-hexachlorocyclohexane, are inducibly expressed in the presence of their substrates,...
Ohtsubo, Yoshiyuki, Shimura, Minoru, Delawary, Mina, Kimbara, Kazuhide, Takagi, Masamichi, Kudo, Toshiaki, ...
To improve the capabilities of microorganisms relevant for biodegradation, we developed a new genetic approach and applied it to the bph operon (bphEGF[orf4]A1A2A3CD[orf1]A4R) of Pseudomonas sp....
A candidate prostate cancer susceptibility gene encodes tRNA 3′ processing endoribonuclease
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
tRNA 3′ processing endoribonuclease (3′ tRNase) is an enzyme responsible for the removal of a 3′ trailer from precursor tRNA (pre-tRNA). We purified ∼85 kDa 3′ tRNase from pig liver and...
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Mammalian tRNase ZL shows versatility in substrate recognition. This enzyme can not only process pre-tRNAs by cleaving off their 3′ trailer sequences, but also recognize and cleave pre-tRNA-like...
The N-terminal half-domain of the long form of tRNase Z is required for the RNase 65 activity
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Transfer RNA (tRNA) 3′ processing endoribonuclease (tRNase Z) is an enzyme responsible for the removal of a 3′ trailer from pre-tRNA. There exists two types of tRNase Z: one is a short form...
Minagawa, Asako, Takaku, Hiroaki, Ishii, Ryohei, Takagi, Masamichi, Yokoyama, Shigeyuki, Nashimoto, Masayuki
Thermotoga maritima tRNase Z cleaves pre-tRNAs containing the 74CCA76 sequence precisely after the A76 residue to create the mature 3′ termini. Its crystal structure has revealed a four-layer...
Horiuchi, Hiroyuki, Fujiwara, Makoto, Yamashita, Shuichi, Ohta, Akinori, Takagi, Masamichi
We have found that the Aspergillus nidulans csmA gene encodes a novel protein which consists of an N-terminal myosin motor-like domain and a C-terminal chitin synthase domain (M. Fujiwara, H....
Nagata, Yuji, Futamura, Akiko, Miyauchi, Keisuke, Takagi, Masamichi
γ-Hexachlorocyclohexane (γ-HCH) is one of several highly chlorinated insecticides that cause serious environmental problems. The cellular proteins of a γ-HCH-degrading bacterium, Sphingomonas...
Miyauchi, Keisuke, Adachi, Yugo, Nagata, Yuji, Takagi, Masamichi
Sphingomonas (formerly Pseudomonas) paucimobilis UT26 utilizes γ-hexachlorocyclohexane (γ-HCH), a halogenated organic insecticide, as a sole source of carbon and energy. In a previous study, we...
Miyauchi, Keisuke, Suh, Seug-Kyo, Nagata, Yuji, Takagi, Masamichi
Sphingomonas (formerly Pseudomonas) paucimobilis UT26 utilizes γ-hexachlorocyclohexane (γ-HCH), a halogenated organic insecticide, as a sole carbon and energy source. In a previous study, we showed...
Nakazawa, Takanobu, Horiuchi, Hiroyuki, Ohta, Akinori, Takagi, Masamichi
Additional copies of the centromeric DNA (CEN) region induce pseudohyphal growth in a dimorphic yeast, Candida maltosa (T. Nakazawa, T. Motoyama, H. Horiuchi, A. Ohta, and M. Takagi, J. Bacteriol....
Miyauchi, Keisuke, Lee, Haeng-Seog, Fukuda, Masao, Takagi, Masamichi, Nagata, Yuji
In Sphingomonas paucimobilis UT26, LinD and LinE activities, which are responsible for the degradation of γ-hexachlorocyclohexane, are inducibly expressed in the presence of their substrates,...
Ohtsubo, Yoshiyuki, Shimura, Minoru, Delawary, Mina, Kimbara, Kazuhide, Takagi, Masamichi, Kudo, Toshiaki, ...
To improve the capabilities of microorganisms relevant for biodegradation, we developed a new genetic approach and applied it to the bph operon (bphEGF[orf4]A1A2A3CD[orf1]A4R) of Pseudomonas sp....
A candidate prostate cancer susceptibility gene encodes tRNA 3′ processing endoribonuclease
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
tRNA 3′ processing endoribonuclease (3′ tRNase) is an enzyme responsible for the removal of a 3′ trailer from precursor tRNA (pre-tRNA). We purified ∼85 kDa 3′ tRNase from pig liver and...
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Mammalian tRNase ZL shows versatility in substrate recognition. This enzyme can not only process pre-tRNAs by cleaving off their 3′ trailer sequences, but also recognize and cleave pre-tRNA-like...
The N-terminal half-domain of the long form of tRNase Z is required for the RNase 65 activity
Takaku, Hiroaki, Minagawa, Asako, Takagi, Masamichi, Nashimoto, Masayuki
Transfer RNA (tRNA) 3′ processing endoribonuclease (tRNase Z) is an enzyme responsible for the removal of a 3′ trailer from pre-tRNA. There exists two types of tRNase Z: one is a short form...
Minagawa, Asako, Takaku, Hiroaki, Ishii, Ryohei, Takagi, Masamichi, Yokoyama, Shigeyuki, Nashimoto, Masayuki
Thermotoga maritima tRNase Z cleaves pre-tRNAs containing the 74CCA76 sequence precisely after the A76 residue to create the mature 3′ termini. Its crystal structure has revealed a four-layer...
Ishii, Ryohei, Minagawa, Asako, Takaku, Hiroaki, Takagi, Masamichi, Nashimoto, Masayuki, Yokoyama, Shigeyuki
The crystal structure of T. maritima tRNase Z has been determined at 1.97 Å. The structure shows the flexible arm and the fully metal-binding active site.