Van Het Hoog, Marco, Rast, Timothy J, Martchenko, Mikhail, Grindle, Suzanne, Dignard, Daniel, Hogues, Hervé, ...
Abstract Background The 10.9× genomic sequence of Candida albicans , the most important human fungal pathogen, was published in 2004. Assembly 19 consisted of 412 supercontigs, of which 266 were a...
Martin, David MA, Berriman, Matthew, Barton, Geoffrey J
Abstract Background The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for predicting gene...
Hall, Neil, Berriman, Matthew, Lennard, Nicola J., Harris, Barbara R., Hertz-Fowler, Christiane, Bart-Delabesse, Emmanuelle N., ...
The African trypanosome, Trypanosoma brucei, causes sleeping sickness in humans in sub-Saharan Africa. Here we report the sequence and analysis of the 1.1 Mb chromosome I, which encodes approximately...
Bringaud, Frédéric, Biteau, Nicolas, Melville, Sara E., Hez, Stéphanie, El-Sayed, Najib M., Leech, Vanessa, ...
Bringaud, Frédéric, Biteau, Nicolas, Melville, Sara E., Hez, Stéphanie, El-Sayed, Najib M., Leech, Vanessa, ...
We describe a novel gene family that forms clusters in subtelomeric regions of Trypanosoma brucei chromosomes and partially accounts for the observed clustering of retrotransposons. The ingi and...
Hall, Neil, Berriman, Matthew, Lennard, Nicola J., Harris, Barbara R., Hertz-Fowler, Christiane, Bart-Delabesse, Emmanuelle N., ...
The African trypanosome, Trypanosoma brucei, causes sleeping sickness in humans in sub-Saharan Africa. Here we report the sequence and analysis of the 1.1 Mb chromosome I, which encodes approximately...
GeneDB: a resource for prokaryotic and eukaryotic organisms
Hertz-Fowler, Christiane, Peacock, Chris S., Wood, Valerie, Aslett, Martin, Kerhornou, Arnaud, Mooney, Paul, ...
GeneDB (http://www.genedb.org/) is a genome database for prokaryotic and eukaryotic organisms. The resource provides a portal through which data generated by the Pathogen Sequencing Unit at the...
Armstrong, Miles R., Whisson, Stephen C., Pritchard, Leighton, Bos, Jorunn I. B., Venter, Eduard, Avrova, Anna O., ...
The oomycete Phytophthora infestans causes late blight, the potato disease that precipitated the Irish famines in 1846 and 1847. It represents a reemerging threat to potato production and is one of...
A Human-Curated Annotation of the Candida albicans Genome
Braun, Burkhard R, Van Het Hoog, Marco, D'Enfert, Christophe, Martchenko, Mikhail, Dungan, Jan, Kuo, Alan, ...
Recent sequencing and assembly of the genome for the fungal pathogen Candida albicans used simple automated procedures for the identification of putative genes. We have reviewed the entire assembly,...
Plasmodium falciparum Variant Surface Antigen Expression Patterns during Malaria
Bull, Peter C, Berriman, Matthew, Kyes, Sue, Quail, Michael A, Hall, Neil, Kortok, Moses M, ...
The variant surface antigens expressed on Plasmodium falciparum–infected erythrocytes are potentially important targets of immunity to malaria and are encoded, at least in part, by a family of var...
The genetic map and comparative analysis with the physical map of Trypanosoma brucei
MacLeod, Annette, Tweedie, Alison, McLellan, Sarah, Taylor, Sonya, Hall, Neil, Berriman, Matthew, ...
Trypanosoma brucei is the causative agent of African sleeping sickness in humans and contributes to the debilitating disease ‘Nagana’ in cattle. To date we know little about the genes that...
The genetic map and comparative analysis with the physical map of Trypanosoma brucei
MacLeod, Annette, Tweedie, Alison, McLellan, Sarah, Taylor, Sonya, Hall, Neil, Berriman, Matthew, ...
The Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, Alasdair C., Peacock, Christopher S., Worthey, Elizabeth A., Murphy, Lee, Aggarwal, Gautam, Berriman, Matthew, ...
Bringaud, Frédéric, Biteau, Nicolas, Melville, Sara E., Hez, Stéphanie, El-Sayed, Najib M., Leech, Vanessa, ...
Bringaud, Frédéric, Biteau, Nicolas, Melville, Sara E., Hez, Stéphanie, El-Sayed, Najib M., Leech, Vanessa, ...
We describe a novel gene family that forms clusters in subtelomeric regions of Trypanosoma brucei chromosomes and partially accounts for the observed clustering of retrotransposons. The ingi and...
Hall, Neil, Berriman, Matthew, Lennard, Nicola J., Harris, Barbara R., Hertz-Fowler, Christiane, Bart-Delabesse, Emmanuelle N., ...
The African trypanosome, Trypanosoma brucei, causes sleeping sickness in humans in sub-Saharan Africa. Here we report the sequence and analysis of the 1.1 Mb chromosome I, which encodes approximately...
GeneDB: a resource for prokaryotic and eukaryotic organisms
Hertz-Fowler, Christiane, Peacock, Chris S., Wood, Valerie, Aslett, Martin, Kerhornou, Arnaud, Mooney, Paul, ...
GeneDB (http://www.genedb.org/) is a genome database for prokaryotic and eukaryotic organisms. The resource provides a portal through which data generated by the Pathogen Sequencing Unit at the...
Armstrong, Miles R., Whisson, Stephen C., Pritchard, Leighton, Bos, Jorunn I. B., Venter, Eduard, Avrova, Anna O., ...
The oomycete Phytophthora infestans causes late blight, the potato disease that precipitated the Irish famines in 1846 and 1847. It represents a reemerging threat to potato production and is one of...
A Human-Curated Annotation of the Candida albicans Genome
Braun, Burkhard R, Van Het Hoog, Marco, D'Enfert, Christophe, Martchenko, Mikhail, Dungan, Jan, Kuo, Alan, ...
Recent sequencing and assembly of the genome for the fungal pathogen Candida albicans used simple automated procedures for the identification of putative genes. We have reviewed the entire assembly,...
Plasmodium falciparum Variant Surface Antigen Expression Patterns during Malaria
Bull, Peter C, Berriman, Matthew, Kyes, Sue, Quail, Michael A, Hall, Neil, Kortok, Moses M, ...
The variant surface antigens expressed on Plasmodium falciparum–infected erythrocytes are potentially important targets of immunity to malaria and are encoded, at least in part, by a family of var...
The genetic map and comparative analysis with the physical map of Trypanosoma brucei
MacLeod, Annette, Tweedie, Alison, McLellan, Sarah, Taylor, Sonya, Hall, Neil, Berriman, Matthew, ...
Trypanosoma brucei is the causative agent of African sleeping sickness in humans and contributes to the debilitating disease ‘Nagana’ in cattle. To date we know little about the genes that...
The genetic map and comparative analysis with the physical map of Trypanosoma brucei
MacLeod, Annette, Tweedie, Alison, McLellan, Sarah, Taylor, Sonya, Hall, Neil, Berriman, Matthew, ...
Boyle, Jon P., Rajasekar, Badri, Saeij, Jeroen P. J., Ajioka, James W., Berriman, Matthew, Paulsen, Ian, ...
Toxoplasma gondii, an obligate intracellular protozoan of the phylum Apicomplexa, is estimated to infect over a billion people worldwide as well as a great many other mammalian and avian hosts....
Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
Khan, Asis, Böhme, Ulrike, Kelly, Krystyna A., Adlem, Ellen, Brooks, Karen, Simmonds, Mark, ...
Toxoplasma gondii is a globally distributed protozoan parasite that can infect virtually all warm-blooded animals and humans. Despite the existence of a sexual phase in the life cycle, T. gondii has...
Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes
Van Het Hoog, Marco, Rast, Timothy J, Martchenko, Mikhail, Grindle, Suzanne, Dignard, Daniel, Hogues, Hervé, ...
For Assembly 20 of the Candida albicans genome, the sequence of each of the eight chromosomes was determined, revealing new insights into gene family creation and dispersion, subtelomere...
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization
Ling, King-Hwa, Rajandream, Marie-Adele, Rivailler, Pierre, Ivens, Alasdair, Yap, Soon-Joo, Madeira, Alda M.B.N., ...
Eimeria tenella is an intracellular protozoan parasite that infects the intestinal tracts of domestic fowl and causes coccidiosis, a serious and sometimes lethal enteritis. Eimeria falls in the same...
Differential var gene expression in the organs of patients dying of falciparum malaria
Montgomery, Jacqui, Mphande, Fingani A, Berriman, Matthew, Pain, Arnab, Rogerson, Stephen J, Taylor, Terrie E, ...
Sequestration of parasitized erythrocytes in the microcirculation of tissues is thought to be important in the pathogenesis of severe falciparum malaria. A major variant surface antigen,...