An evolutionary and structural characterization of mammalian protein complex organization (2008)
Wong, Philip, Althammer, Sonja, Hildebrand, Andrea, Kirschner, Andreas, Pagel, Philipp, Geissler, Bernd, ...
Abstract Background We have recently released a comprehensive, manually curated database of mammalian protein complexes called CORUM. Combining CORUM with other resources, we assembled a dataset of...
Analysis of biomolecular networks using a generic network analysis suite (2008)
The role of biomolecular networks in scientific research has shifted from being solely information resources for possible cellular partners (whether these embody proteins, (ribo-)nucleic acids or...
The DIMA web resource—exploring the protein domain network (2008)
Genome Analysis, Matthias Oesterheld, Volker Stümpflen, Dmitrij Frishman
doi:10.1093/bioinformatics/btl050
BMC Biology BioMed Central (2008)
Samuel Kerrien, Ra Orchard, Luisa Montecchi-palazzi, Bruno Ar, Antony F Quinn, Nisha Vinod, ...
Software Broadening the horizon – level 2.5 of the HUPO-PSI format for
DIMA 2.0 predicted and known domain interactions (2008)
Pagel, Philipp, Oesterheld, Matthias, Tovstukhina, Oksana, Strack, Norman, Stümpflen, Volker, Frishman, Dmitrij
DIMA—the domain interaction map has evolved from a simple web server for domain phylogenetic profiling into an integrative prediction resource combining both experimental data on domain–domain...
Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions (2007)
Kerrien, Samuel, Orchard, Sandra, Montecchi-Palazzi, Luisa, Aranda, Bruno, Quinn, Antony F, Vinod, Nisha, ...
Abstract Background Molecular interaction Information is a key resource in modern biomedical research. Publicly available data have previously been provided in a broad array of diverse formats,...
Analysis of integrated biomolecular networks using a generic network analysis suite (2007)
Oesterheld, Matthias, Mewes, Hans Werner, Stümpflen, Volker
The informative value of biomolecular networks has shifted from being solely information resources for possible cellular partners (whether these embody proteins, (ribo)nucleic acids or small...
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis (2006)
Kahmann, Regine, Bölker, Michael, Ma, Li-Jun, Brefort, Thomas, Saville, Barry J, ...
Ustilago maydis is a ubiquitous pathogen of maize and a well-established model organism for the study of plant-microbe interactions. This basidiomycete fungus does not use aggressive virulence...
The DIMA web resource--exploring the protein domain network (2006)
Pagel, Philipp, Oesterheld, Matthias, Stümpflen, Volker, Frishman, Dmitrij
Summary: Conserved domains represent essential building blocks of most known proteins. Owing to their role as modular components carrying out specific functions they form a network based both on...
MPact: the MIPS protein interaction resource on yeast (2006)
Güldener, Ulrich, Münsterkötter, Martin, Oesterheld, Matthias, Pagel, Philipp, Ruepp, Andreas, Mewes, Hans-Werner, ...
In recent years, the Munich Information Center for Protein Sequences (MIPS) yeast protein–protein interaction (PPI) dataset has been used in numerous analyses of protein networks and has been...
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum (2006)
Güldener, Ulrich, Mannhaupt, Gertrud, Münsterkötter, Martin, Haase, Dirk, Oesterheld, Matthias, Stümpflen, Volker, ...
The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two...
Ruepp, Andreas, Doudieu, Octave Noubibou, Van Den Oever, Jos, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Fobo, Gisela, ...
MfunGD (http://mips.gsf.de/genre/proj/mfungd/) provides a resource for annotated mouse proteins and their occurrence in protein networks. Manual annotation concentrates on proteins which are found to...
doi:10.1093/nar/gkj003 MPact: the MIPS protein interaction resource on yeast (2005)
Ulrich Güldener, Martin Münsterkötter, Matthias Oesterheld, Hans-werner Mewes, Volker Stümpflen, J. D. Han, ...
In recent years, the Munich Information Center for Protein Sequences (MIPS) yeast protein–protein interaction (PPI) dataset has been used in numerous analyses of protein networks and has been...
doi:10.1093/nar/gkj074 The Mouse Functional Genome Database (MfunGD): (2005)
Octave Noubibou Doudieu, Barbara Brauner, Irmtraud Dunger-kaltenbach, Gisela Fobo, Goar Frishman, ...
functional annotation of proteins in the light of their cellular context
Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Volker Stümpflen, ...
FGDB: a comprehensive fungal genome resource
The MIPS mammalian protein-protein interaction database (2005)
Pagel, Philipp, Kovac, Stefan, Oesterheld, Matthias, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Frishman, Goar, ...
Summary: The MIPS mammalian protein–protein interaction database (MPPI) is a new resource of high-quality experimental protein interaction data in mammals. The content is based on published...
The MIPS mammalian protein-protein interaction database (2004)
Pagel, Philipp, Kovac, Stefan, Oesterheld, Matthias, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Frishman, Goar, ...
Summary: The MIPS mammalian protein-protein interaction database (MPPI) is a new resource of high-quality experimental protein interaction data in mammals. The content is based on published...
The MIPS mammalian protein-protein interaction database (2004)
Pagel, Philipp, Kovac, Stefan, Oesterheld, Matthias, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Frishman, Goar, ...
Summary: The MIPS mammalian protein-protein interaction database (MPPI) is a new resource of high-quality experimental protein interaction data in mammals. The content is based on published...
MPact: the MIPS protein interaction resource on yeast
Güldener, Ulrich, Münsterkötter, Martin, Oesterheld, Matthias, Pagel, Philipp, Ruepp, Andreas, Mewes, Hans-Werner, ...
In recent years, the Munich Information Center for Protein Sequences (MIPS) yeast protein–protein interaction (PPI) dataset has been used in numerous analyses of protein networks and has been...
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum
Güldener, Ulrich, Mannhaupt, Gertrud, Münsterkötter, Martin, Haase, Dirk, Oesterheld, Matthias, Stümpflen, Volker, ...
The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two...
Ruepp, Andreas, Doudieu, Octave Noubibou, Van Den Oever, Jos, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Fobo, Gisela, ...
MfunGD () provides a resource for annotated mouse proteins and their occurrence in protein networks. Manual annotation concentrates on proteins which are found to interact physically with other...
MPact: the MIPS protein interaction resource on yeast
Güldener, Ulrich, Münsterkötter, Martin, Oesterheld, Matthias, Pagel, Philipp, Ruepp, Andreas, Mewes, Hans-Werner, ...
In recent years, the Munich Information Center for Protein Sequences (MIPS) yeast protein–protein interaction (PPI) dataset has been used in numerous analyses of protein networks and has been...
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum
Güldener, Ulrich, Mannhaupt, Gertrud, Münsterkötter, Martin, Haase, Dirk, Oesterheld, Matthias, Stümpflen, Volker, ...
The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two...
Ruepp, Andreas, Doudieu, Octave Noubibou, Van Den Oever, Jos, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Fobo, Gisela, ...
MfunGD () provides a resource for annotated mouse proteins and their occurrence in protein networks. Manual annotation concentrates on proteins which are found to interact physically with other...
Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions
Kerrien, Samuel, Orchard, Sandra, Montecchi-Palazzi, Luisa, Aranda, Bruno, Quinn, Antony F, Vinod, Nisha, ...
DIMA 2.0—predicted and known domain interactions
Pagel, Philipp, Oesterheld, Matthias, Tovstukhina, Oksana, Strack, Norman, Stümpflen, Volker, Frishman, Dmitrij
DIMA—the domain interaction map has evolved from a simple web server for domain phylogenetic profiling into an integrative prediction resource combining both experimental data on domain–domain...