Bajaj, Kanika, Madhusudhan, MS, Adkar, Bharat V, Chakrabarti, Purbani, Ramakrishnan, C, Sali, Andrej, ...
When incorporated into a polypeptide chain, proline (Pro) differs from all other naturally occurring amino acid residues in two important respects. The \phi dihedral angle of Pro is constrained to...
Bajaj, Kanika, Madhusudhan, MS, Adkar, Bharat V, Chakrabarti, Purbani, Ramakrishnan, C, Sali, Andrej, ...
When incorporated into a polypeptide chain, proline (Pro) differs from all other naturally occurring amino acid residues in two important respects. The \phi dihedral angle of Pro is constrained to...
Deducing Hydration Sites of a Protein from Molecular Dynamics Simulations (2001)
Madhusudhan, MS, Vishveshwara, S
Invariant water molecules that are of structural or functional importance to proteins are detected from their presence in the same location in different crystal structures of the same protein or...
Madhusudhan, MS, Sanjeev, BS, Vishveshwara, S
We have undertaken the modeling of substrate-bound structures of angiogenin. In our recent study, we modeled the dinucleotide ligand binding to human angiogenin. In the present study, the substrates...
Computer Modeling of Human Angiogenin-Dinucleotide Substrate Interaction (2001)
Madhusudhan, MS, Vishveshwara, S
Structures of substrate bound human angiogenin complexes have been obtained for the first time by computer modeling. The dinucleotides CpA and UpA have been docked onto human angiogenin using a...
Madhusudhan, MS, Sanjeev, BS, Vishveshwara, S
We have undertaken the modeling of substrate-bound structures of angiogenin. In our recent study, we modeled the dinucleotide ligand binding to human angiogenin. In the present study, the substrates...
Computer Modeling of Human Angiogenin-Dinucleotide Substrate Interaction (2001)
Madhusudhan, MS, Vishveshwara, S
Structures of substrate bound human angiogenin complexes have been obtained for the first time by computer modeling. The dinucleotides CpA and UpA have been docked onto human angiogenin using a...
Molecular dynamics simulations of modelled angiogenin-mononucleotide complexes (2000)
Madhusudhan, MS, Vishveshwara, S
Angiogenin, a protein belonging to the RNase superfamily stimulates the formation of blood vessels. For its biological activity, it also has to catalyse the cleavage of single- stranded RNA. Though...
Molecular dynamics simulations of modelled angiogenin-mononucleotide complexes (2000)
Madhusudhan, MS, Vishveshwara, S
Angiogenin, a protein belonging to the RNase superfamily stimulates the formation of blood vessels. For its biological activity, it also has to catalyse the cleavage of single- stranded RNA. Though...
Comparison of the Dynamics of Bovine and Human Angiogenin: A Molecular Dynamics Study (1999)
Madhusudhan, MS, Vishveshwara, Saraswathi
Molecular dynamics simulations have been carried out for I ns on human and bovine angiogenin systems in an effort to compare and contrast their dynamics. An analysis of their dynamics is done by...