808 RESEARCH ARTICLE Global Mapping of the Yeast Genetic Interaction Network (2008)
Amy Hin, Yan Tong, Guillaume Lesage, Gary D. Bader, Huiming Ding, Hong Xu, ...
A genetic interaction network containing �1000 genes and �4000 interactions was mapped by crossing mutations in 132 different query genes into a set of �4700 viable gene yeast deletion mutants...
Greene, Derek, Cagney, Gerard, Krogan, Nevan, Cunningham, Pádraig
Motivation: When working with large-scale protein interaction data, an important analysis task is the assignment of pairs of proteins to groups that correspond to higher order assemblies. Previously...
Suter, Bernhard, Pogoutse, Oxana, Guo, Xinghua, Krogan, Nevan, Lewis, Peter, Greenblatt, Jack F, ...
Abstract Background Histone modifications have been implicated in the regulation of transcription and, more recently, in DNA replication and repair. In yeast, a major conserved histone...
Pitre, Sylvain, Dehne, Frank, Chan, Albert, Cheetham, Jim, Duong, Alex, Emili, Andrew, ...
Abstract Background Identification of protein interaction networks has received considerable attention in the post-genomic era. The currently available biochemical approaches used to detect...
Bmc Bioinformatics, Sylvain Pitre, Frank Dehne, Albert Chan, Jim Cheetham, Alex Duong, ...
Research article PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs
The functional landscape of mouse gene expression (2004)
Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, ...
Abstract Background Large-scale quantitative analysis of transcriptional co-expression has been used to dissect regulatory networks and to predict the functions of new genes discovered by genome...
Bromodomain Factor 1 (Bdf1) Is Phosphorylated by Protein Kinase CK2
Sawa, Chika, Nedea, Eduard, Krogan, Nevan, Wada, Tadashi, Handa, Hiroshi, Greenblatt, Jack, ...
Bromodomain factor 1 (Bdf1) associates with Saccharomyces cerevisiae TFIID and corresponds to the C-terminal half of higher eukaryotic TAF1. It also associates with the SWR-C complex, which is...
The functional landscape of mouse gene expression
Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, ...
Esf2p, a U3-Associated Factor Required for Small-Subunit Processome Assembly and Compaction
Hoang, Tran, Peng, Wen-Tao, Vanrobays, Emmanuel, Krogan, Nevan, Hiley, Shawna, Beyer, Ann L., ...
Esf2p is the Saccharomyces cerevisiae homolog of mouse ABT1, a protein previously identified as a putative partner of the TATA-element binding protein. However, large-scale studies have indicated...
Bromodomain Factor 1 (Bdf1) Is Phosphorylated by Protein Kinase CK2
Sawa, Chika, Nedea, Eduard, Krogan, Nevan, Wada, Tadashi, Handa, Hiroshi, Greenblatt, Jack, ...
Bromodomain factor 1 (Bdf1) associates with Saccharomyces cerevisiae TFIID and corresponds to the C-terminal half of higher eukaryotic TAF1. It also associates with the SWR-C complex, which is...
The functional landscape of mouse gene expression
Zhang, Wen, Morris, Quaid D, Chang, Richard, Shai, Ofer, Bakowski, Malina A, Mitsakakis, Nicholas, ...
Esf2p, a U3-Associated Factor Required for Small-Subunit Processome Assembly and Compaction
Hoang, Tran, Peng, Wen-Tao, Vanrobays, Emmanuel, Krogan, Nevan, Hiley, Shawna, Beyer, Ann L., ...
Esf2p is the Saccharomyces cerevisiae homolog of mouse ABT1, a protein previously identified as a putative partner of the TATA-element binding protein. However, large-scale studies have indicated...
Suter, Bernhard, Pogoutse, Oxana, Guo, Xinghua, Krogan, Nevan, Lewis, Peter, Greenblatt, Jack F, ...
Gong, Yunchen, Kakihara, Yoshito, Krogan, Nevan, Greenblatt, Jack, Emili, Andrew, Zhang, Zhaolei, ...
Molecular chaperones are known to be involved in many cellular functions, however, a detailed and comprehensive overview of the interactions between chaperones and their cofactors and substrates is...