Harith Alani, Nigel Shadbolt, Natalya F. Noy, Mark A. Musen, Nigam Shah
As more ontologies become publicly available, finding the “right ” ontologies becomes much harder. In this paper, we address the problem of ontology search: finding a collection of ontologies...
UMLS-Query: A Perl Module for Querying the UMLS (2008)
The Metathesaurus from the Unified Medical Language System (UMLS) is a widely used ontology resource, which is mostly used in a relational database form for terminology research, mapping and...
Primary osteogenic sarcoma of the breast: A case report (2008)
Khan, Shabuddin, Griffiths, Ewen A, Shah, Nigam, Ravi, Srinivasan
Abstract Introduction Primary osteosarcoma of the breast is a rare malignant tumour. It is typically a poor prognosis tumour, which has some interesting features worthy of discussion. We report a...
Chaudhry, Aisha, Griffiths, Ewen A, Shah, Nigam, Ravi, Srinivasan
Abstract Introduction Granular cell tumours of the abdominal wall are extremely rare: less than 10 have been reported in the worldwide medical literature. We report this interesting case, review the...
A System for Ontology-Based Annotation of Biomedical Data (2008)
Jonquet, Clément, Musen, Mark, Shah, Nigam
We present a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to provide a service that enables users to locate biomedical data resources...
A System for Ontology-Based Annotation of Biomedical Data (2008)
Jonquet, Clément, Musen, Mark, Shah, Nigam
We present a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to provide a service that enables users to locate biomedical data resources...
Phillip Lord, Nigam Shah, Philip E. Bourne, Matt Cockerill, Biomed Central, Mike Bada, ...
The Bio-Ontologies Meeting has existed as a Special Interest Group meeting at ISMB for more than a decade, making it one of the longest running SIG meetings. The Bio-Ontologies SIG meeting has...
Searching Ontologies Based on Content: Experiments in the Biomedical Domain (2007)
Alani, Harith, Noy, Natasha, Shah, Nigam, Shadbolt, Nigel, Musen, Mark
As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we address the problem of ontology search: finding a collection of ontologies from an...
Searching Ontologies Based on Content: Experiments in the Biomedical Domain (2007)
Alani, Harith, Noy, Natasha, Shah, Nigam, Shadbolt, Nigel, Musen, Mark
As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we address the problem of ontology search: finding a collection of ontologies from an...
Searching Biomedical Ontologies based on Content (2007)
Alani, Harith, Noy, Natasha, Shah, Nigam, Shadbolt, Nigel, Musen, Mark
As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we introduce a new ontology search technique which is based on corpus analysis. In...
Searching Biomedical Ontologies based on Content (2007)
Alani, Harith, Noy, Natasha, Shah, Nigam, Shadbolt, Nigel, Musen, Mark
As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we introduce a new ontology search technique which is based on corpus analysis. In...
Using annotations from controlled vocabularies to find meaningful associations (2007)
Woei-jyh Lee, Louiqa Raschid, Padmini Srinivasan, Nigam Shah, Daniel Rubin, Natasha Noy
Abstract. This paper presents the LSLink (or Life Science Link) methodology that provides users with a set of tools to explore the rich Web of interconnected and annotated objects in multiple...
Madhusmita Mitra, Nigam Shah, Lukas Mueller, Scuth Pin, Nina Fedoroff
We have built a microarray database, StressDB, for management of microarray data from our studies on stress-modulated genes in Arabidopsis. StressDB provides small user groups with a locally...
Formal Methods for Genomic Data Integration (2005)
The rapid growth of life sciences research and the associated literature over the past decade, the rapid expansion of biological databases, and invention of high throughput techniques that permit...
Formal methods for genomic data integration [electronic resource] / (2005)
The full text of the dissertation is available as a Adobe Acrobat .pdf file (107 p.) ; Adobe Acrobat Reader required to view the file.
Formal methods for genomic data integration (2005)
Thesis (Ph.D.)--Pennsylvania State University, 2005.
Characterizing the stress/defense transcriptome of Arabidopsis (2003)
Mahalingam, Ramamurthy, Gomez-Buitrago, AnaMaria, Eckardt, Nancy, Shah, Nigam, Guevara-Garcia, Angel, Day, Philip, ...
Abstract Background To understand the gene networks that underlie plant stress and defense responses, it is necessary to identify and characterize the genes that respond both initially and as the...
Research Characterizing the stress/defense transcriptome of Arabidopsis (2003)
Ramamurthy Mahalingam, Anamaria Gomez-buitrago, Nancy Eckardt, Nigam Shah, Angel Guevara-garcia, Philip Day, ...
The electronic version of this article is the complete one and can be found online at
Madhusmita Mitra, Nigam Shah, Lukas Mueller, Scuth Pin, Nina Fedoroff
We have built a microarray database, StressDB, for management of microarray data from our studies on stress-modulated genes in Arabidopsis. StressDB provides small user groups with a locally...
PGEN: A Novel Approach to Sequential Circuit Test Generation (1996)
Wen-Ben Jone, Nigam Shah, Anita Gleason, Sunil R. Das
A novel approach, called PGEN, is proposed to generate test patterns for resettable or nonresettable synchronous sequential circuits. PGEN contains two major routines, Sequential PODEM (S-PODEM) and...
PGEN : a novel approach to sequential circuit test generation /--by Nigam Shah. (1991)
Thesis (M.S.)--New Mexico Institute of Mining and Technology, 1991.
Characterizing the stress/defense transcriptome of Arabidopsis
Mahalingam, Ramamurthy, Gomez-Buitrago, AnaMaria, Eckardt, Nancy, Shah, Nigam, Guevara-Garcia, Angel, Day, Philip, ...
PCR-based suppression subtractive hybridization was used to identify Arabidopsis genes that are differentially expressed in response to ozone, pathogens and the signaling molecules salicylic acid and...
Characterizing the stress/defense transcriptome of Arabidopsis
Mahalingam, Ramamurthy, Gomez-Buitrago, AnaMaria, Eckardt, Nancy, Shah, Nigam, Guevara-Garcia, Angel, Day, Philip, ...
PCR-based suppression subtractive hybridization was used to identify Arabidopsis genes that are differentially expressed in response to ozone, pathogens and the signaling molecules salicylic acid and...
Mitra, Madhusmita, Shah, Nigam, Mueller, Lukas, Pin, Scuth, Fedoroff, Nina
We have built a microarray database, StressDB, for management of microarray data from our studies on stress-modulated genes in Arabidopsis. StressDB provides small user groups with a locally...
Primary osteogenic sarcoma of the breast: A case report
Khan, Shabuddin, Griffiths, Ewen A, Shah, Nigam, Ravi, Srinivasan
Comparison of Ontology-based Semantic-Similarity Measures
Lee, Wei-Nchih, Shah, Nigam, Sundlass, Karanjot, Musen, Mark
Semantic-similarity measures quantify concept similarities in a given ontology. Potential applications for these measures include search, data mining, and knowledge discovery in database or...