Naoki Takada, Noriyuki Futatsugi, Atsushi Suenaga, Tetsu Narumi, Noriaki Okimoto, ...
Introduction Molecular dynamics (MD) simulation is a very useful technique for studying the structure and dynamics of biologically important molecules such as proteins and DNA/RNA. In MD simulations,...
Makoto Taiji, Noriyuki Futatsugi, Tetsu Narumi, Atsushi Suenaga, Yousuke Ohno, Naoki Takada, ...
We are developing the ‘Protein Explorer ’ system, a petaflops special-purpose computer system for molecular dynamics simulations. The Protein Explorer is a PC cluster equipped with...
Okimoto, Noriaki, Futatsugi, Noriyuki, Fuji, Hideyoshi, Suenaga, Atsushi, Morimoto, Gentaro, Yanai, Ryoko, ...
Virtual compound screening using molecular docking is widely used in the discovery of new lead compounds for drug design. However, this method is not completely reliable and therefore unsatisfactory....