Chan, Agnes P, Melake-Berhan, Admasu, O'Brien, Kimberly, Buckley, Stephanie, Quan, Hui, Chen, Dan, ...
Abstract Background The lycophyte Selaginella moellendorffii is a vascular plant that diverged from the fern/seed plant lineage at least 400 million years ago. Although genomic information for S....
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzaepv. oryzae PXO99A (2008)
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...
Abstract Background Xanthomonas oryzae pv. oryzae causes bacterial blight of rice ( Oryza sativa L.), a major disease that constrains production of this staple crop in many parts of the world. We...
Epigenetic Natural Variation in Arabidopsis thaliana (2007)
Matthew W. Vaughn, Miloš Tanurdić, Zachary Lippman, Hongmei Jiang, Robert Carrasquillo, Pablo D. Rabinowicz, ...
Cytosine methylation of repetitive sequences is widespread in plant genomes, occurring in both symmetric (CpG and CpNpG) as well as asymmetric sequence contexts. We used the methylation-dependent...
Ways to get from plant genomes to phenomes: via yeast (2005)
Rabinowicz, Pablo D, Rensink, Willem
A report on the Cold Spring Harbor Laboratory meeting 'Plant Genomes: From Sequence to Phenome', Cold Spring Harbor, USA, 9-12 December 2004.
Sorghum Genome Sequencing by Methylation Filtration (2005)
Joseph A. Bedell, Muhammad A. Budiman, Andrew Nunberg, Robert W. Citek, Dan Robbins, Joshua Jones, ...
Methylation filtration makes practical the sequencing of large genomes, such as those found in sorghum, by preferentially capturing functionally relevant sequences.
Sorghum Genome Sequencing by Methylation Filtration (2005)
Joseph A. Bedell, Muhammad A. Budiman, Andrew Nunberg, Robert W. Citek, Dan Robbins, Joshua Jones, ...
Sorghum bicolor is a close relative of maize and is a staple crop in Africa and much of the developing world because of its superior tolerance of arid growth conditions. We have generated sequence...
Rabinowicz, Pablo D, Byrne, Mary E
A report on the talks presented at the Cold Spring Harbor 2000 Meeting on Arabidopsis Genomics, New York, 7-10 December, 2000.
How many genes does it take to make a human being? (2000)
Rabinowicz, Pablo D, Vollbrecht, Erik, May, Bruce
A meeting report from the 13th Annual Cold Spring Harbor meeting on Genome Sequencing and Biology, May 10-14, 2000. Cold Spring Harbor, New York Conference website: http://www.cshl.org/meetings
How many genes does it take to make a human being?
Rabinowicz, Pablo D, Vollbrecht, Erik, May, Bruce
A meeting report from the 13th Annual Cold Spring Harbor meeting on Genome Sequencing and Biology, May 10-14, 2000. Cold Spring Harbor, New York
Rabinowicz, Pablo D, Byrne, Mary E
A report on the talks presented at the Cold Spring Harbor 2000 Meeting on Arabidopsis Genomics, New York, 7-10 December, 2000.
Maize-targeted mutagenesis: A knockout resource for maize
May, Bruce P., Liu, Hong, Vollbrecht, Erik, Senior, Lynn, Rabinowicz, Pablo D., Roh, Donna, ...
We describe an efficient system for site-selected transposon mutagenesis in maize. A total of 43,776 F1 plants were generated by using Robertson's Mutator (Mu) pollen parents and self-pollinated to...
Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
Rabinowicz, Pablo D., Palmer, Lance E., May, Bruce P., Hemann, Michael T., Lowe, Scott W., McCombie, W. Richard, ...
DNA methylation is found in many eukaryotes, but its function is still controversial. We have studied the methylation of plant and animal genomes using a PCR-based technique amenable for high...
Sorghum Genome Sequencing by Methylation Filtration
Bedell, Joseph A, Budiman, Muhammad A, Nunberg, Andrew, Citek, Robert W, Robbins, Dan, Jones, Joshua, ...
Sorghum bicolor is a close relative of maize and is a staple crop in Africa and much of the developing world because of its superior tolerance of arid growth conditions. We have generated sequence...
Ways to get from plant genomes to phenomes: via yeast
Rabinowicz, Pablo D, Rensink, Willem
A report on the Cold Spring Harbor Laboratory meeting 'Plant Genomes: From Sequence to Phenome', Cold Spring Harbor, USA, 9-12 December 2004.
Chan, Agnes P., Pertea, Geo, Cheung, Foo, Lee, Dan, Zheng, Li, Whitelaw, Cathy, ...
Maize is a staple crop of the grass family and also an excellent model for plant genetics. Owing to the large size and repetitiveness of its genome, we previously investigated two approaches to...
Differential methylation of genes and repeats in land plants
Rabinowicz, Pablo D., Citek, Robert, Budiman, Muhammad A., Nunberg, Andrew, Bedell, Joseph A., Lakey, Nathan, ...
The hypomethylated fraction of plant genomes is usually enriched in genes and can be selectively cloned using methylation filtration (MF). Therefore, MF has been used as a gene enrichment technology...
How many genes does it take to make a human being?
Rabinowicz, Pablo D, Vollbrecht, Erik, May, Bruce
A meeting report from the 13th Annual Cold Spring Harbor meeting on Genome Sequencing and Biology, May 10-14, 2000. Cold Spring Harbor, New York
Rabinowicz, Pablo D, Byrne, Mary E
A report on the talks presented at the Cold Spring Harbor 2000 Meeting on Arabidopsis Genomics, New York, 7-10 December, 2000.
Maize-targeted mutagenesis: A knockout resource for maize
May, Bruce P., Liu, Hong, Vollbrecht, Erik, Senior, Lynn, Rabinowicz, Pablo D., Roh, Donna, ...
We describe an efficient system for site-selected transposon mutagenesis in maize. A total of 43,776 F1 plants were generated by using Robertson's Mutator (Mu) pollen parents and self-pollinated to...
Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
Rabinowicz, Pablo D., Palmer, Lance E., May, Bruce P., Hemann, Michael T., Lowe, Scott W., McCombie, W. Richard, ...
DNA methylation is found in many eukaryotes, but its function is still controversial. We have studied the methylation of plant and animal genomes using a PCR-based technique amenable for high...
Sorghum Genome Sequencing by Methylation Filtration
Bedell, Joseph A, Budiman, Muhammad A, Nunberg, Andrew, Citek, Robert W, Robbins, Dan, Jones, Joshua, ...
Sorghum bicolor is a close relative of maize and is a staple crop in Africa and much of the developing world because of its superior tolerance of arid growth conditions. We have generated sequence...
Ways to get from plant genomes to phenomes: via yeast
Rabinowicz, Pablo D, Rensink, Willem
A report on the Cold Spring Harbor Laboratory meeting 'Plant Genomes: From Sequence to Phenome', Cold Spring Harbor, USA, 9-12 December 2004.
Differential methylation of genes and repeats in land plants
Rabinowicz, Pablo D., Citek, Robert, Budiman, Muhammad A., Nunberg, Andrew, Bedell, Joseph A., Lakey, Nathan, ...
The hypomethylated fraction of plant genomes is usually enriched in genes and can be selectively cloned using methylation filtration (MF). Therefore, MF has been used as a gene enrichment technology...
Chan, Agnes P., Pertea, Geo, Cheung, Foo, Lee, Dan, Zheng, Li, Whitelaw, Cathy, ...
Maize is a staple crop of the grass family and also an excellent model for plant genetics. Owing to the large size and repetitiveness of its genome, we previously investigated two approaches to...
The TIGR Plant Transcript Assemblies database
Childs, Kevin L., Hamilton, John P., Zhu, Wei, Ly, Eugene, Cheung, Foo, Wu, Hank, ...
The TIGR Plant Transcript Assemblies (TA) database () uses expressed sequences collected from the NCBI GenBank Nucleotide database for the construction of transcript assemblies. The sequences...
Uneven chromosome contraction and expansion in the maize genome
Bruggmann, Rémy, Bharti, Arvind K., Gundlach, Heidrun, Lai, Jinsheng, Young, Sarah, Pontaroli, Ana C., ...
Maize (Zea mays or corn), both a major food source and an important cytogenetic model, evolved from a tetraploid that arose about 4.8 million years ago (Mya). As a result, maize has extensive...
Epigenetic Natural Variation in Arabidopsis thaliana
Vaughn, Matthew W, Tanurdžić, Miloš, Lippman, Zachary, Jiang, Hongmei, Carrasquillo, Robert, Rabinowicz, Pablo D, ...
Cytosine methylation of repetitive sequences is widespread in plant genomes, occurring in both symmetric (CpG and CpNpG) as well as asymmetric sequence contexts. We used the methylation-dependent...
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, ...