Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans (2007)
Sievert, Stefan M., Scott, Kathleen M., Klotz, Martin G., Chain, Patrick S. G., Hauser, Loren J., Hemp, James, ...
Author Posting. © American Society for Microbiology, 2008. This article is posted here by permission of American Society for Microbiology for personal use, not for redistribution. The definitive...
Kane, Staci R., Chakicherla, Anu Y., Chain, Patrick S.G., Schmidt, Radomir, Shin, Maria W., Legler, Tina C., ...
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 (2006)
Scott, Kathleen M., Sievert, Stefan M., Abril, Fereniki N., Ball, Lois A., Barrett, Chantell J., Blake, Rodrigo A., ...
© 2006 Scott et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any...
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 (2006)
Scott, Kathleen M., Sievert, Stefan M., Abril, Fereniki N., Ball, Lois A., Barrett, Chantell J., Blake, Rodrigo A., ...
© 2006 Scott et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any...
The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2 (2006)
Scott, Kathleen M., Sievert, Stefan M., Abril, Fereniki N., Ball, Lois A., Barrett, Chantell J., Blake, Rodrigo A., ...
Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal...
Chain, Patrick S.G., Hu, Ping, Malfatti, Stephanie A., Radnedge, Lyndsay, Larimer, Frank, Vergez, Lisa M., ...
Yersinia pestis, the causative agent of bubonic and pneumonic plague, has undergone detailed study at the molecular level. To further investigate the genomic diversity among this group and to help...
Chain, Patrick S. G., Hernandez-Lucas, Ismael, Golding, Brian, Finan, Turlough M.
We have developed a procedure to directly clone large fragments from the genome of the soil bacterium Sinorhizobium meliloti. Specific regions to be cloned are first flanked by parallel copies of an...
Garcia, Emilio, Elliott, Jeffrey M., Ramanculov, Erlan, Chain, Patrick S. G., Chu, May C., Molineux, Ian J.
The genome sequence of bacteriophage φA1122 has been determined. φA1122 grows on almost all isolates of Yersinia pestis and is used by the Centers for Disease Control and Prevention as a diagnostic...
Whole-Genome Analyses of Speciation Events in Pathogenic Brucellae†
Chain, Patrick S. G., Comerci, Diego J., Tolmasky, Marcelo E., Larimer, Frank W., Malfatti, Stephanie A., Vergez, Lisa M., ...
Despite their high DNA identity and a proposal to group classical Brucella species as biovars of Brucella melitensis, the commonly recognized Brucella species can be distinguished by distinct...
Beller, Harry R., Chain, Patrick S. G., Letain, Tracy E., Chakicherla, Anu, Larimer, Frank W., Richardson, Paul M., ...
The complete genome sequence of Thiobacillus denitrificans ATCC 25259 is the first to become available for an obligately chemolithoautotrophic, sulfur-compound-oxidizing, β-proteobacterium. Analysis...
Starkenburg, Shawn R., Chain, Patrick S. G., Sayavedra-Soto, Luis A., Hauser, Loren, Land, Miriam L., Larimer, Frank W., ...
The alphaproteobacterium Nitrobacter winogradskyi (ATCC 25391) is a gram-negative facultative chemolithoautotroph capable of extracting energy from the oxidation of nitrite to nitrate. Sequencing and...
Chain, Patrick S. G., Hu, Ping, Malfatti, Stephanie A., Radnedge, Lyndsay, Larimer, Frank, Vergez, Lisa M., ...
Yersinia pestis, the causative agent of bubonic and pneumonic plagues, has undergone detailed study at the molecular level. To further investigate the genomic diversity among this group and to help...
Chain, Patrick S. G., Hernandez-Lucas, Ismael, Golding, Brian, Finan, Turlough M.
We have developed a procedure to directly clone large fragments from the genome of the soil bacterium Sinorhizobium meliloti. Specific regions to be cloned are first flanked by parallel copies of an...
Garcia, Emilio, Elliott, Jeffrey M., Ramanculov, Erlan, Chain, Patrick S. G., Chu, May C., Molineux, Ian J.
The genome sequence of bacteriophage φA1122 has been determined. φA1122 grows on almost all isolates of Yersinia pestis and is used by the Centers for Disease Control and Prevention as a diagnostic...
Whole-Genome Analyses of Speciation Events in Pathogenic Brucellae†
Chain, Patrick S. G., Comerci, Diego J., Tolmasky, Marcelo E., Larimer, Frank W., Malfatti, Stephanie A., Vergez, Lisa M., ...
Despite their high DNA identity and a proposal to group classical Brucella species as biovars of Brucella melitensis, the commonly recognized Brucella species can be distinguished by distinct...
Beller, Harry R., Chain, Patrick S. G., Letain, Tracy E., Chakicherla, Anu, Larimer, Frank W., Richardson, Paul M., ...
The complete genome sequence of Thiobacillus denitrificans ATCC 25259 is the first to become available for an obligately chemolithoautotrophic, sulfur-compound-oxidizing, β-proteobacterium. Analysis...
Starkenburg, Shawn R., Chain, Patrick S. G., Sayavedra-Soto, Luis A., Hauser, Loren, Land, Miriam L., Larimer, Frank W., ...
The alphaproteobacterium Nitrobacter winogradskyi (ATCC 25391) is a gram-negative facultative chemolithoautotroph capable of extracting energy from the oxidation of nitrite to nitrate. Sequencing and...
Chain, Patrick S. G., Hu, Ping, Malfatti, Stephanie A., Radnedge, Lyndsay, Larimer, Frank, Vergez, Lisa M., ...
Yersinia pestis, the causative agent of bubonic and pneumonic plagues, has undergone detailed study at the molecular level. To further investigate the genomic diversity among this group and to help...
Klotz, Martin G., Arp, Daniel J., Chain, Patrick S. G., El-Sheikh, Amal F., Hauser, Loren J., Hommes, Norman G., ...
The gammaproteobacterium Nitrosococcus oceani (ATCC 19707) is a gram-negative obligate chemolithoautotroph capable of extracting energy and reducing power from the oxidation of ammonia to nitrite....
The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2
Scott, Kathleen M, Sievert, Stefan M, Abril, Fereniki N, Ball, Lois A, Barrett, Chantell J, Blake, Rodrigo A, ...
Presented here is the complete genome sequence of Thiomicrospira crunogena XCL-2, representative of ubiquitous chemolithoautotrophic sulfur-oxidizing bacteria isolated from deep-sea hydrothermal...
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
Chain, Patrick S. G., Denef, Vincent J., Konstantinidis, Konstantinos T., Vergez, Lisa M., Agulló, Loreine, Reyes, Valeria Latorre, ...
Burkholderia xenovorans LB400 (LB400), a well studied, effective polychlorinated biphenyl-degrader, has one of the two largest known bacterial genomes and is the first nonpathogenic Burkholderia...
Kane, Staci R., Chakicherla, Anu Y., Chain, Patrick S. G., Schmidt, Radomir, Shin, Maria W., Legler, Tina C., ...
Methylibium petroleiphilum PM1 is a methylotroph distinguished by its ability to completely metabolize the fuel oxygenate methyl tert-butyl ether (MTBE). Strain PM1 also degrades aromatic (benzene,...
Kane, Staci R., Chakicherla, Anu Y., Chain, Patrick S. G., Schmidt, Radomir, Shin, Maria W., Legler, Tina C., ...
Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans▿ †
Sievert, Stefan M., Scott, Kathleen M., Klotz, Martin G., Chain, Patrick S. G., Hauser, Loren J., Hemp, James, ...
Sulfur-oxidizing epsilonproteobacteria are common in a variety of sulfidogenic environments. These autotrophic and mixotrophic sulfur-oxidizing bacteria are believed to contribute substantially to...
Starkenburg, Shawn R., Larimer, Frank W., Stein, Lisa Y., Klotz, Martin G., Chain, Patrick S. G., Sayavedra-Soto, Luis A., ...
The alphaproteobacterium Nitrobacter hamburgensis X14 is a gram-negative facultative chemolithoautotroph that conserves energy from the oxidation of nitrite to nitrate. Sequencing and analysis of the...
Norton, Jeanette M., Klotz, Martin G., Stein, Lisa Y., Arp, Daniel J., Bottomley, Peter J., Chain, Patrick S. G., ...
The complete genome of the ammonia-oxidizing bacterium Nitrosospira multiformis (ATCC 25196T) consists of a circular chromosome and three small plasmids totaling 3,234,309 bp and encoding 2,827...
Divergence among Genes Encoding the Elongation Factor Tu of Yersinia Species▿
Isabel, Sandra, Leblanc, Éric, Boissinot, Maurice, Boudreau, Dominique K., Grondin, Myrian, Picard, François J., ...
Elongation factor Tu (EF-Tu), encoded by tuf genes, carries aminoacyl-tRNA to the ribosome during protein synthesis. Duplicated tuf genes (tufA and tufB), which are commonly found in enterobacterial...
Oda, Yasuhiro, Larimer, Frank W., Chain, Patrick S. G., Malfatti, Stephanie, Shin, Maria V., Vergez, Lisa M., ...
The bacterial genus Rhodopseudomonas is comprised of photosynthetic bacteria found widely distributed in aquatic sediments. Members of the genus catalyze hydrogen gas production, carbon dioxide...
Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella▿ †
Foster, Jeffrey T., Beckstrom-Sternberg, Stephen M., Pearson, Talima, Beckstrom-Sternberg, James S., Chain, Patrick S. G., Roberto, Francisco F., ...
Brucellae are worldwide bacterial pathogens of livestock and wildlife, but phylogenetic reconstructions have been challenging due to limited genetic diversity. We assessed the taxonomic and...