MMDB: annotating protein sequences with Entrez's 3D-structure database (2007)
Wang, Yanli, Addess, Kenneth J., Chen, Jie, Geer, Lewis Y., He, Jane, He, Siqian, ...
Three-dimensional (3D) structure is now known for a large fraction of all protein families. Thus, it has become rather likely that one will find a homolog with known 3D structure when searching a...
State of the art: refinement of multiple sequence alignments (2006)
Chakrabarti, Saikat, Lanczycki, Christopher J, Panchenko, Anna R, Przytycka, Teresa M, Thiessen, Paul A, Bryant, Stephen H
Abstract Background Accurate multiple sequence alignments of proteins are very important in computational biology today. Despite the numerous efforts made in this field, all alignment strategies have...
Refining multiple sequence alignments with conserved core regions. Nucleic Acids Res (2006)
Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka, Paul A. Thiessen, Stephen H. Bryant
core regions
Research article State of the art: refinement of multiple sequence alignments (2006)
Bmc Bioinformatics, Saikat Chakrabarti, Christopher J Lanczycki, Anna R Panchenko, Teresa M Przytycka, Paul A Thiessen, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Refining multiple sequence alignments with conserved core regions (2006)
Chakrabarti, Saikat, Lanczycki, Christopher J., Panchenko, Anna R., Przytycka, Teresa M., Thiessen, Paul A., Bryant, Stephen H.
Accurate multiple sequence alignments of proteins are very important to several areas of computational biology and provide an understanding of phylogenetic history of domain families, their...
A structure-based method for protein sequence alignment (2005)
Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Ro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant
doi:10.1093/bioinformatics/bti233
CDD: a Conserved Domain Database for protein classification (2005)
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
A structure-based method for protein sequence alignment (2005)
Kann, Maricel G., Thiessen, Paul A., Panchenko, Anna R., Schäffer, Alejandro A., Altschul, Stephen F., Bryant, Stephen H.
Motivation: With the continuing rapid growth of protein sequence data, protein sequence comparison methods have become the most widely used tools of bioinformatics. Among these methods are those that...
A structure-based method for protein sequence alignment (2004)
Kann, Maricel G., Thiessen, Paul A., Panchenko, Anna R., Schäffer, Alejandro A., Altschul, Stephen F., Bryant, Stephen H.
Motivation: With the continuing rapid growth of protein sequence data, protein sequence comparison methods have become the most widely used tools of bioinformatics. Among these methods are those that...
A structure-based method for protein sequence alignment (2004)
Kann, Maricel G., Thiessen, Paul A., Panchenko, Anna R., Schäffer, Alejandro A., Altschul, Stephen F., Bryant, Stephen H.
Motivation: With the continuing rapid growth of protein sequence data, protein sequence comparison methods have become the most widely used tools of bioinformatics. Among these methods are those that...
CDD: a curated Entrez database of conserved domain alignments (2003)
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
MMDB: Entrez's 3D-structure database (2003)
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
DOI: 10.1093/nar/gkg086 MMDB: Entrez’s 3D-structure database (2002)
Jie Chen, John B. Anderson, Carol Deweese-scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of...
MMDB: Entrez's 3D-structure database (2002)
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
MMDB: Entrez’s 3D-structure database
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
MMDB: Entrez's 3D-structure database
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
CDD: a curated Entrez database of conserved domain alignments
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
Refining multiple sequence alignments with conserved core regions
Chakrabarti, Saikat, Lanczycki, Christopher J., Panchenko, Anna R., Przytycka, Teresa M., Thiessen, Paul A., Bryant, Stephen H.
Accurate multiple sequence alignments of proteins are very important to several areas of computational biology and provide an understanding of phylogenetic history of domain families, their...
State of the art: refinement of multiple sequence alignments
Chakrabarti, Saikat, Lanczycki, Christopher J, Panchenko, Anna R, Przytycka, Teresa M, Thiessen, Paul A, Bryant, Stephen H
MMDB: Entrez’s 3D-structure database
Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., ...
Three-dimensional structures are now known within many protein families and it is quite likely, in searching a sequence database, that one will encounter a homolog with known structure. The goal of...
CDD: a database of conserved domain alignments with links to domain three-dimensional structure
Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
The Conserved Domain Database (CDD) is a compilation of multiple sequence alignments representing protein domains conserved in molecular evolution. It has been populated with alignment data from the...
MMDB: Entrez's 3D-structure database
Chen, Jie, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
Three-dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez's...
CDD: a curated Entrez database of conserved domain alignments
Marchler-Bauer, Aron, Anderson, John B., DeWeese-Scott, Carol, Fedorova, Natalie D., Geer, Lewis Y., He, Siqian, ...
The Conserved Domain Database (CDD) is now indexed as a separate database within the Entrez system and linked to other Entrez databases such as MEDLINE®. This allows users to search for domain types...
CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, ...
The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and...
Refining multiple sequence alignments with conserved core regions
Chakrabarti, Saikat, Lanczycki, Christopher J., Panchenko, Anna R., Przytycka, Teresa M., Thiessen, Paul A., Bryant, Stephen H.
Accurate multiple sequence alignments of proteins are very important to several areas of computational biology and provide an understanding of phylogenetic history of domain families, their...
State of the art: refinement of multiple sequence alignments
Chakrabarti, Saikat, Lanczycki, Christopher J, Panchenko, Anna R, Przytycka, Teresa M, Thiessen, Paul A, Bryant, Stephen H
MMDB: annotating protein sequences with Entrez's 3D-structure database
Wang, Yanli, Addess, Kenneth J., Chen, Jie, Geer, Lewis Y., He, Jane, He, Siqian, ...
Three-dimensional (3D) structure is now known for a large fraction of all protein families. Thus, it has become rather likely that one will find a homolog with known 3D structure when searching a...