5. Extended Analysis of ChIP-chip Validation p19-20 (2010)
Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-joseph
Contents 1. Dynamic Regulatory Event Maps p2-3 (2010)
Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-joseph
2. Microarray Data Preprocessing p4-5
Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks (2010)
Beg, Qasim K., De Fabritiis, G., Villà-Freixa, Jordi
Various molecular interaction networks have been claimed to follow power-law decay for their global connectivity distribution. It has been proposed that there may be underlying generative models that...
Impact of the solvent capacity constraint on E. colimetabolism (2008)
Vazquez, Alexei, Beg, Qasim K, DeMenezes, Marcio A, Ernst, Jason, Bar-Joseph, Ziv, Barabási, Albert-László, ...
Abstract Background Obtaining quantitative predictions for cellular metabolic activities requires the identification and modeling of the physicochemical constraints that are relevant at physiological...
Alexei Vazquez, Qasim K Beg, Marcio A Demenezes, Jason Ernst, Ziv Bar-joseph, Albert-lászló Barabási, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Radu Dobrin, Qasim K Beg, Albert-lászló Barabási, Zoltán N Oltvai, Zoltán N Oltvai
Background: Transcriptional regulation of cellular functions is carried out through a complex network of interactions among transcription factors and the promoter regions of genes and operons...
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
Dobrin, Radu, Beg, Qasim K, Barabási, Albert-László, Oltvai, Zoltán N
Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
Dobrin, Radu, Beg, Qasim K, Barabási, Albert-László, Oltvai, Zoltán N
A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli
Ernst, Jason, Beg, Qasim K., Kay, Krin A., Balázsi, Gábor, Oltvai, Zoltán N., Bar-Joseph, Ziv
While Escherichia coli has one of the most comprehensive datasets of experimentally verified transcriptional regulatory interactions of any organism, it is still far from complete. This presents a...