Using Profile Matching and Text Categorization for Answer Extraction in TREC Genomics (2009)
Haiqing Zheng, Chen Lin, Lishen Huang, Jun Xu, Jiaqian Zheng, Qi Sun, ...
TREC’06 genomics track was focusing on text mining and passage retrieval. WIM lab participated in this year’s TREC genomics track. Our system consists of five parts: preprocessing, sentence...
Zamora, Alejandro, Sun, Qi, Hamblin, Martha T., Aquadro, Charles F., Kresovich, Stephen
Disease response genes (DRGs) diverge under recurrent positive selection as a result of a molecular arms race between hosts and pathogens. Most of these studies were conducted in animals, and few...
PPDB, the Plant Proteomics Database at Cornell (2009)
Sun, Qi, Zybailov, Boris, Majeran, Wojciech, Friso, Giulia, Olinares, Paul Dominic B., Van Wijk, Klaas J.
The Plant Proteomics Database (PPDB; http://ppdb.tc.cornell.edu), launched in 2004, provides an integrated resource for experimentally identified proteins in Arabidopsis and maize (Zea mays)....
Constraint-Based Modular Secure Information Flow Inference (2008)
Qi Sun, M. Barnett Date, D. Duggan Date, S. Wetzel Date
for Object-Oriented Programs This thesis addresses the problem of checking programs written in an object-oriented language to ensure that they satisfy the information flow policies, confidentiality...
Short-term genome evolution of Listeria monocytogenesin a non-controlled environment (2008)
Orsi, Renato H, Borowsky, Mark L, Lauer, Peter, Young, Sarah K, Nusbaum, Chad, Galagan, James E, ...
Abstract Background While increasing data on bacterial evolution in controlled environments are available, our understanding of bacterial genome evolution in natural environments is limited. We thus...
Orsi, Renato H, Sun, Qi, Wiedmann, Martin
Abstract Background The genus Listeria includes two closely related pathogenic and non-pathogenic species, L. monocytogenes and L. innocua . L. monocytogenes is an opportunistic human foodborne and...
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment (2008)
Orsi, Renato H., Borowsky, Mark L., Lauer, Peter, Young, Sarah K., Nusbaum, Chad, Galagan, James E., ...
Background: While increasing data on bacterial evolution in controlled environments are available, our understanding of bacterial genome evolution in natural environments is limited. We thus...
Allowing State Changes in Specifications February 25, 2006 (2008)
Mike Barnett, David A. Naumann, Wolfram Schulte, Qi Sun
Abstract. We provide a static analysis (using both dataflow analysis and theorem proving) to allow state changes within specifications. This can be used for specification languages that share the...
Kim, Tae-Sung, Booth, James G, Gauch, Hugh G, Sun, Qi, Park, Jongsun, Lee, Yong-Hwan, ...
Abstract Background Simple sequence repeats (SSRs) have been successfully used for various genetic and evolutionary studies in eukaryotic systems. The eukaryotic model organism Neurospora crassa is...
Sun, Qi, Chen, Keping, Zhang, Shu
Ventricular Safety Standby (VSS) was designed to prevent the potentially serious consequences of crosstalk in many dual-chamber pulse generators. In this report, we describe a patient in whom the VSS...
Panzea: an update on new content and features (2008)
Canaran, Payan, Buckler, Edward S., Glaubitz, Jeffrey C., Stein, Lincoln, Sun, Qi, Zhao, Wei, ...
Panzea (http://www.panzea.org), the public web site of the project ‘Molecular and Functional Diversity in the Maize Genome’, has expanded over the past two years in data content, display tools...
Constraint-based secure information flow inference for a Java-like language (2007)
We address the problem of checking programs written in a Java-like language, to ensure that they satisfy information flow policies like confidentiality and integrity in the presence of dynamic access...
Ayman Al-zayed, Robert R. Swisher, Frédéric Lécuyer, Andrew C. Guyette, Student Member, ...
We report a simple theory for the reduction of substrate modes in quasi-optical power-combining arrays. This qualitative theory predicts that detrimental substrate-mode effects can be greatly reduced...
Ramsey, John S, Wilson, Alex CC, De Vos, Martin, Sun, Qi, Tamborindeguy, Cecilia, Winfield, Agnese, ...
Abstract Background The green peach aphid, Myzus persicae (Sulzer), is a world-wide insect pest capable of infesting more than 40 plant families, including many crop species. However, despite the...
BMC Evolutionary Biology (2007)
Renato H Orsi, Qi Sun, Martin Wiedmann
Research article Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes
Modern adult education philosophies during the 20th century have many perceptions on ends and means. Efforts to create means to reach personal, business, and social needs, resolving various kinds of...
Modern adult education philosophies during the 20th century have many perceptions on ends and means. Efforts to create means to reach personal, business, and social needs, resolving various kinds of...
Molecular genetics of axon guidance in Drosophila melanogaster (2005)
Understanding the cellular and molecular mechanisms governing axon guidance and synaptogenesis is a central issue in developmental neurobiology. The Drosophila embryonic central nervous system, with...
Sherwood, Nina Tang, Sun, Qi, Xue, Mingshan, Zhang, Bing, Zinn, Kai
The most common form of human autosomal dominant hereditary spastic paraplegia (AD-HSP) is caused by mutations in the SPG4 (spastin) gene, which encodes an AAA ATPase closely related in sequence to...
Nina Tang Sherwood, Qi Sun, Mingshan Xue, Bing Zhang, Kai Zinn
Kai Zinn and colleagues use loss- and gain-of function mutations to study the Drosophila homologue of a gene mutated in human autosomal dominant hereditary spastic paraplegia.
Nina Tang Sherwood, Qi Sun, Mingshan Xue, Bing Zhang, Kai Zinn
The most common form of human autosomal dominant hereditary spastic paraplegia (AD-HSP) is caused by mutations in the SPG4 (spastin) gene, which encodes an AAA ATPase closely related in sequence to...
Modular and constraint-based information flow inference for an object-oriented language (2004)
Qi Sun, Anindya Banerjee, David A. Naumann
Abstract. This paper addresses the problem of checking programs written in an object-oriented language to ensure that they satisfy the information flow policies, confidentiality and integrity. Policy...
pure: Useful Abstractions in Specifications (2004)
Mike Barnett David, David A. Naumann, Wolfram Schulte, Qi Sun
Specification languages that use the same expression language as the implementation language must decide whether or not to permit functional abstraction, i.e., method calls in specification...
99.44% pure: Useful abstractions in specifications (2004)
Mike Barnett, David A. Naumann, Wolfram Schulte, Qi Sun
Abstract. Specification languages that use the same expression language as the implementation language must deal with whether or not to permit functional abstraction, i.e., method calls in...
Peer-to-Peer Research at Stanford (2003)
Mayank Bawa, Brian F. Cooper, Arturo Crespo, Neil Daswani, Prasanna Ganesan, Hector Garcia-molina, ...
this paper we present recent and ongoing research projects of the Peers research group at Stanford University. Section 2 studies the problems relating to locating resources in P2P systems. Section 3...
Perennial wisdom and modern problems : the ends/means issue of adult education / (2001)
Thesis (Ed. D.)--Northern Illinois University, 2001.
Thesis (M. Phil.)--Chinese University of Hong Kong, 2001.
Sun, Qi, Bahri, Sami, Schmid, Aloisia, Chia, William, Zinn, Kai
Neural receptor-linked protein tyrosine phosphatases (RPTPs) are required for guidance of motoneuron and photoreceptor growth cones in Drosophila. These phosphatases have not been implicated in...
Molecular genetics of axon guidance in Drosophila melanogaster (1999)
Understanding the cellular and molecular mechanisms governing axon guidance and synaptogenesis is a central issue in developmental neurobiology. The Drosophila embryonic central nervous system, with...
An analysis of options mispricing and the smile effect / (1998)
Thesis (Ph. D.)--State University of New York at Stony Brook, 1998.
Reflector optimization and substrate analysis of grid oscillator [microform] / (1998)
Thesis (M.S.)--University of Hawaii at Manoa, 1998.
Reflector optimization and substrate analysis of grid oscillator / (1998)
Thesis (M.S.)--University of Hawaii at Manoa, 1998.
Thermal oxidation characteristics of chemical vapor deposited diamond films /--Qi Sun. (1992)
Thesis (M.S.)--New Mexico Institute of Mining and Technology, 1992.
Thesis (M.S.)--Chemistry Dept., South Dakota State University, 1990.
Friso, Giulia, Giacomelli, Lisa, Ytterberg, A. Jimmy, Peltier, Jean-Benoit, Rudella, Andrea, Sun, Qi, ...
An extensive analysis of the Arabidopsis thaliana peripheral and integral thylakoid membrane proteome was performed by sequential extractions with salt, detergent, and organic solvents, followed by...
Sun, Qi, Emanuelsson, Olof, Van Wijk, Klaas J.
Carefully curated proteomes of the inner envelope membrane, the thylakoid membrane, and the thylakoid lumen of chloroplasts from Arabidopsis were assembled based on published, well-documented...
Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function
Sherwood, Nina Tang, Sun, Qi, Xue, Mingshan, Zhang, Bing, Zinn, Kai
The most common form of human autosomal dominant hereditary spastic paraplegia (AD-HSP) is caused by mutations in the SPG4 (spastin) gene, which encodes an AAA ATPase closely related in sequence to...
Gene trap and gene inversion methods for conditional gene inactivation in the mouse
Xin, Hong-Bo, Deng, Ke-Yu, Shui, Bo, Qu, Shimian, Sun, Qi, Lee, Jane, ...
Conditional inactivation of individual genes in mice using site-specific recombinases is an extremely powerful method for determining the complex roles of mammalian genes in developmental and...
Wisser, Randall J., Sun, Qi, Hulbert, Scot H., Kresovich, Stephen, Nelson, Rebecca J.
Much research has been devoted to understanding the biology of plant-pathogen interactions. The extensive genetic analysis of disease resistance in rice, coupled with the sequenced genome and genomic...
Education-Related Gender Differences in Health in Rural China
Wu, Jing, Liu, Yuanli, Rao, Keqin, Sun, Qi, Qian, Juncheng, Li, Zhu
We investigated gender differences in education-related health inequalities in rural China. Household interview data were obtained from 6 provinces in 1993 and 2001. Remarkable health inequalities...
Majeran, Wojciech, Cai, Yang, Sun, Qi, Van Wijk, Klaas J.
Chloroplasts of maize (Zea mays) leaves differentiate into specific bundle sheath (BS) and mesophyll (M) types to accommodate C4 photosynthesis. Consequences for other plastid functions are not well...
Friso, Giulia, Giacomelli, Lisa, Ytterberg, A. Jimmy, Peltier, Jean-Benoit, Rudella, Andrea, Sun, Qi, ...
An extensive analysis of the Arabidopsis thaliana peripheral and integral thylakoid membrane proteome was performed by sequential extractions with salt, detergent, and organic solvents, followed by...
Sun, Qi, Emanuelsson, Olof, Van Wijk, Klaas J.
Carefully curated proteomes of the inner envelope membrane, the thylakoid membrane, and the thylakoid lumen of chloroplasts from Arabidopsis were assembled based on published, well-documented...
Drosophila Spastin Regulates Synaptic Microtubule Networks and Is Required for Normal Motor Function
Sherwood, Nina Tang, Sun, Qi, Xue, Mingshan, Zhang, Bing, Zinn, Kai
The most common form of human autosomal dominant hereditary spastic paraplegia (AD-HSP) is caused by mutations in the SPG4 (spastin) gene, which encodes an AAA ATPase closely related in sequence to...
Gene trap and gene inversion methods for conditional gene inactivation in the mouse
Xin, Hong-Bo, Deng, Ke-Yu, Shui, Bo, Qu, Shimian, Sun, Qi, Lee, Jane, ...
Conditional inactivation of individual genes in mice using site-specific recombinases is an extremely powerful method for determining the complex roles of mammalian genes in developmental and...
Majeran, Wojciech, Cai, Yang, Sun, Qi, Van Wijk, Klaas J.
Chloroplasts of maize (Zea mays) leaves differentiate into specific bundle sheath (BS) and mesophyll (M) types to accommodate C4 photosynthesis. Consequences for other plastid functions are not well...
Education-Related Gender Differences in Health in Rural China
Wu, Jing, Liu, Yuanli, Rao, Keqin, Sun, Qi, Qian, Juncheng, Li, Zhu
We investigated gender differences in education-related health inequalities in rural China. Household interview data were obtained from 6 provinces in 1993 and 2001. Remarkable health inequalities...
Wisser, Randall J., Sun, Qi, Hulbert, Scot H., Kresovich, Stephen, Nelson, Rebecca J.
Much research has been devoted to understanding the biology of plant-pathogen interactions. The extensive genetic analysis of disease resistance in rice, coupled with the sequenced genome and genomic...
Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design
Ramsey, John S, Wilson, Alex CC, De Vos, Martin, Sun, Qi, Tamborindeguy, Cecilia, Winfield, Agnese, ...
Panzea: an update on new content and features
Canaran, Payan, Buckler, Edward S., Glaubitz, Jeffrey C., Stein, Lincoln, Sun, Qi, Zhao, Wei, ...
Panzea (http://www.panzea.org), the public web site of the project ‘Molecular and Functional Diversity in the Maize Genome’, has expanded over the past two years in data content, display tools...
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
Kim, Tae-Sung, Booth, James G, Gauch, Hugh G, Sun, Qi, Park, Jongsun, Lee, Yong-Hwan, ...
Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome
Zybailov, Boris, Rutschow, Heidi, Friso, Giulia, Rudella, Andrea, Emanuelsson, Olof, Sun, Qi, ...
Characterization of the chloroplast proteome is needed to understand the essential contribution of the chloroplast to plant growth and development. Here we present a large scale analysis by...
Productivity, Preferences and UIP deviations in an Open Economy Business Cycle Model
Arnab Bhattacharjee, Jagjit S. Chadha, Qi Sun
We show that a ‡ex-price two-sector open economy DSGE model can explain the poor degree of international risk sharing and exchange rate disconnect. We use a suite of model evaluation measures and...
Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain
Wang, Xu, Sun, Qi, McGrath, Sean D., Mardis, Elaine R., Soloway, Paul D., Clark, Andrew G.
Imprinted genes display differential allelic expression in a manner that depends on the sex of the transmitting parent. The degree of imprinting is often tissue-specific and/or developmental...
Reconnecting Money to Inflation: The Role of the External Finance Premium
Jagjit S. Chadha, Luisa Corrado, Qi Sun
In the canonical monetary policy model, money is endogenous to the optimal path for interest rates, output. But when liquidity provision by banks dominates the demand for transactions money from the...
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
Orsi, Renato H, Borowsky, Mark L, Lauer, Peter, Young, Sarah K, Nusbaum, Chad, Galagan, James E, ...
PPDB, the Plant Proteomics Database at Cornell
Sun, Qi, Zybailov, Boris, Majeran, Wojciech, Friso, Giulia, Olinares, Paul Dominic B., Van Wijk, Klaas J.
The Plant Proteomics Database (PPDB; http://ppdb.tc.cornell.edu), launched in 2004, provides an integrated resource for experimentally identified proteins in Arabidopsis and maize (Zea mays)....
Majeran, Wojciech, Zybailov, Boris, Ytterberg, A. Jimmy, Dunsmore, Jason, Sun, Qi, Van Wijk, Klaas J.
Chloroplasts of maize leaves differentiate into specific bundle sheath (BS) and mesophyll (M) types to accommodate C4 photosynthesis. Chloroplasts contain thylakoid and envelope membranes that...