ASPIC: a Novel Method to Predict Alternative Splicing (2008)
Paola Bonizzoni, Riccardo Dondi, Raffaella Rizzi, Graziano Pesole
In this paper a new method for detecting splicing sites is proposed. It is based on a combined analysis of all available transcript data in order to produce all transcript alignments to the genomic...
ANSELMO, ANNA, PESOLE, GRAZIANO, RIZZI, RAFFAELLA, BONIZZONI, PAOLA
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization / T. Castrignanò, R. Rizzi, I.G. Talamo, P.D. De Meo, A. Anselmo, P. Bonizzoni, G. Pesole. - In:...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
The fact that a large majority of mammalian genes are subject to alternative splicing indicates that this phenomenon represents a major mechanism for increasing proteome complexity. Here, we provide...
Exemplar longest common subsequence (2006)
Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Laume Fertin, Raffaella Rizzi, Stéphane Vialette
In this paper, we investigate the computational and approximation complexity of the Exemplar Longest Common Subsequence of a set of sequences (ELCS problem), a generalization of the Longest Common...
Castrignanò, Tiziana, Rizzi, Raffaella, Talamo, Ivano Giuseppe, De Meo, Paolo D'Onorio, Anselmo, Anna, Bonizzoni, Paola, ...
Alternative splicing (AS) is now emerging as a major mechanism contributing to the expansion of the transcriptome and proteome complexity of multicellular organisms. The fact that a single gene locus...
Computational methods for alternative splicing prediction (2006)
Bonizzoni, Paola, Rizzi, Raffaella, Pesole, Graziano
The fact that a large majority of mammalian genes are subject to alternative splicing indicates that this phenomenon represents a major mechanism for increasing proteome complexity. Here, we provide...
Bonizzoni, Paola, Rizzi, Raffaella, Pesole, Graziano
The fact that a large majority of mammalian genes are subject to alternative splicing indicates that this phenomenon represents a major mechanism for increasing proteome complexity. Here, we provide...
Bonizzoni, Paola, Rizzi, Raffaella, Pesole, Graziano
Abstract Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic sequence. Apart...
Bmc Bioinformatics, Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
Software ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
Castrignanò, Tiziana, Rizzi, Raffaella, Talamo, Ivano Giuseppe, De Meo, Paolo D'Onorio, Anselmo, Anna, Bonizzoni, Paola, ...
Alternative splicing (AS) is now emerging as a major mechanism contributing to the expansion of the transcriptome and proteome complexity of multicellular organisms. The fact that a single gene locus...
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
Castrignanò, Tiziana, Rizzi, Raffaella, Talamo, Ivano Giuseppe, De Meo, Paolo D'Onorio, Anselmo, Anna, Bonizzoni, Paola, ...
Alternative splicing (AS) is now emerging as a major mechanism contributing to the expansion of the transcriptome and proteome complexity of multicellular organisms. The fact that a single gene locus...