Grapevine cell early activation of specific responses to DIMEB, a resveratrol elicitor (2009)
Zamboni, Anita, Gatto, Pamela, Cestaro, Alessandro, Pilati, Stefania, Viola, Roberto, Mattivi, Fulvio, ...
Abstract Background In response to pathogen attack, grapevine synthesizes phytoalexins belonging to the family of stilbenes. Grapevine cell cultures represent a good model system for studying the...
Lazzari, Barbara, Caprera, Andrea, Cestaro, Alessandro, Merelli, Ivan, Del Corvo, Marcello, Fontana, Paolo, ...
Abstract Background Two complete genome sequences are available for Vitis vinifera Pinot noir. Based on the sequence and gene predictions produced by the IASMA, we performed an in silico detection of...
Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer (2009)
Goremykin, Vadim V., Salamini, Francesco, Velasco, Riccardo, Viola, Roberto
The mitochondrial genome of grape (Vitis vinifera), the largest organelle genome sequenced so far, is presented. The genome is 773,279 nt long and has the highest coding capacity among known...
A SNP transferability survey within the genus Vitis (2008)
Vezzulli, Silvia, Micheletti, Diego, Riaz, Summaira, Pindo, Massimo, Viola, Roberto, This, Patrice, ...
Abstract Background Efforts to sequence the genomes of different organisms continue to increase. The DNA sequence is usually decoded for one individual and its application is for the whole species....
Paolo Fontana, Riccardo Velasco, Giorgio Valle
We present a novel fold recognition method based on the combination of detailed sequence searches and structural information. Presently the protocol implements two different approaches to assign the...
SNP high-throughput screening in grapevine using the SNPlex™ genotyping system (2008)
Pindo, Massimo, Vezzulli, Silvia, Coppola, Giuseppina, Cartwright, Dustin A, Zharkikh, Andrey, Velasco, Riccardo, ...
Abstract Background Until recently, only a small number of low- and mid-throughput methods have been used for single nucleotide polymorphism (SNP) discovery and genotyping in grapevine ( Vitis...
Pilati, Stefania, Perazzolli, Michele, Malossini, Andrea, Cestaro, Alessandro, Demattè, Lorenzo, Fontana, Paolo, ...
Abstract Background Grapevine ( Vitis species) is among the most important fruit crops in terms of cultivated area and economic impact. Despite this relevance, little is known about the...
The SSEA server for protein secondary structure alignment (2005)
Paolo Fontana, Eckart Bindewald, Riccardo Velasco, Giorgio Valle, Via E. Mach
The SSEA server for protein secondary structure alignment (2005)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server that computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
The SSEA server for protein secondary structure alignment (2004)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server which computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
The SSEA server for protein secondary structure alignment (2004)
Fontana, Paolo, Bindewald, Eckart, Toppo, Stefano, Velasco, Riccardo, Valle, Giorgio, Tosatto, Silvio C. E.
Summary: We present a web server which computes alignments of protein secondary structures. The server supports both performing pairwise alignments and searching a secondary structure against a...
Sturaro, Monica, Hartings, Hans, Schmelzer, Elmon, Velasco, Riccardo, Salamini, Francesco, Motto, Mario
The cuticle covering the aerial organs of land plants plays a protective role against several biotic and abiotic stresses and, in addition, participates in a variety of plant-insect interactions....
Sturaro, Monica, Hartings, Hans, Schmelzer, Elmon, Velasco, Riccardo, Salamini, Francesco, Motto, Mario
The cuticle covering the aerial organs of land plants plays a protective role against several biotic and abiotic stresses and, in addition, participates in a variety of plant-insect interactions....
Genetic Mapping in the Presence of Genotyping Errors
Cartwright, Dustin A., Troggio, Michela, Velasco, Riccardo, Gutin, Alexander
Genetic maps are built using the genotypes of many related individuals. Genotyping errors in these data sets can distort genetic maps, especially by inflating the distances. We have extended the...
Troggio, Michela, Malacarne, Giulia, Coppola, Giuseppina, Segala, Cinzia, Cartwright, Dustin A., Pindo, Massimo, ...
The construction of a dense genetic map for Vitis vinifera and its anchoring to a BAC-based physical map is described: it includes 994 loci mapped onto 19 linkage groups, corresponding to the basic...
Pilati, Stefania, Perazzolli, Michele, Malossini, Andrea, Cestaro, Alessandro, Demattè, Lorenzo, Fontana, Paolo, ...
A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety
Velasco, Riccardo, Zharkikh, Andrey, Troggio, Michela, Cartwright, Dustin A., Cestaro, Alessandro, Pruss, Dmitry, ...
SNP high-throughput screening in grapevine using the SNPlex™ genotyping system
Pindo, Massimo, Vezzulli, Silvia, Coppola, Giuseppina, Cartwright, Dustin A, Zharkikh, Andrey, Velasco, Riccardo, ...
A SNP transferability survey within the genus Vitis
Vezzulli, Silvia, Micheletti, Diego, Riaz, Summaira, Pindo, Massimo, Viola, Roberto, This, Patrice, ...