MetNetAligner: a web service tool for metabolic network alignments (2009)
Cheng, Qiong, Harrison, Robert, Zelikovsky, Alexander
Summary: The accumulation of high-throughput genomic, proteomic and metabolical data allows for increasingly accurate modeling and reconstruction of metabolic networks. Alignment of the reconstructed...
Jieyue He, Hae-jin Hu, Robert Harrison, Phang C. Tai, Yi Pan, Senior Member
Abstract—Support vector machines (SVMs) have shown strong generalization ability in a number of application areas, including protein structure prediction. However, the poor comprehensibility...
Bernard Chen, Stephen Pellicer, Phang C. Tai, Robert Harrison, Yi Pan
Protein sequence motifs are gathering more and more attention in the sequence analysis area. These recurring regions have the potential to determine protein's conformation, function and...
Wei Zhong, Gulsah Altun, Robert Harrison, Phang C. Tai, Yi Pan, Senior Member
Abstract—Information about local protein sequence motifs is very important to the analysis of biologically significant conserved regions of protein sequences. These conserved regions can...
Rule Clustering and Super-rule Generation for Transmembrane Segments Prediction (2008)
Jieyue He, Bernard Chen, Hae-jin Hu, Robert Harrison, Phang C. Tai, Yisheng Dong, ...
The explanation of a decision is important for the acceptance of machine learning technology in bioinformatics applications such as protein structure prediction. In past research, we have already...
Xiujuan Chen, Under Direction, Robert Harrison, Yan-qing Zhang
The generalization abilities of machine learning algorithms often depend on the algorithms ’ initialization, parameter settings, training sets, or feature selections. For instance, SVM classifier...
Emilia Mendes, Chris Lokan, Robert Harrison, Christopher Triggs, Emilia Mendes, Chris Lokan
Four years ago was the last time the ISBSG database was used to compare the effort prediction accuracy between cross-company and within-company cost models. Since then more than 2,000 projects have...
Mapping and Filling Metabolic Pathways (2008)
Qiong Cheng, Dipendra Kaur, Robert Harrison, Er Zelikovsky
Abstract. Network mappings are extensively used for comparing, exploring, and predicting biological networks, are essential for pathway database search and also helpful for finding and filling...
Qiong Cheng, Robert Harrison, Er Zelikovsky
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, and potentially...
Specific Scoring Matrix). (2008)
Wei Zhong, Gulsah Altun, Xinmin Tian, Robert Harrison, Phang C. Tai, Yi Pan
Protein secondary structure prediction has a fundamental influence on today’s bioinformatics research. In this work, tertiary classifiers for the protein secondary structure prediction are...
Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients (2008)
Chris Papageorgio, Robert Harrison, Farahnaz B. Rahmatpanah, Kristen Taylor, Wade Da-vis, Charles W. Caldwell
The computational aspects of the problem in this paper involve, firstly, selective mapping of methylated DNA clones according to methylation level and, secondly, extracting motif information from all...
Space-Time Trade-Off Optimization for a Class of (2007)
Electronic Structure Calculations, Daniel Cociorva, Gerald Baumgartner, J. Ramanujam, Marcel Nooijen, Chi-chung Lam, ...
The accurate modeling of the electronic structure of atoms and molecules is very computationally intensive. Many models of electronic structure, such as the Coupled Cluster approach, involve...
IBM, Elsevier Science, and Academic Freedom (2007)
Bailar, John C., Cicolella, Andre, Harrison, Robert, Ladou, Joseph, Levy, Barry S., Rohm, Timothy, ...
Elsevier Science refused to publish a study of IBM workers that IBM sought to keep from public view. Occupational and environmental health (OEH) suffers from the absence of a level playing field on...
Wei Zhong, Gulsah Altun, Xinmin Tian, Robert Harrison, Phang C. Tai, Yi Pan, ...
Abstract Protein secondary structure prediction has a fundamental influence on today’s bioinformatics research. In this work, tertiary classifiers for the protein secondary structure prediction are...
Mariethoz, Julien, Peryt, Maciej, Le Roux, Pascal, Bernard, Frederic, Harrison, Robert, Zerlauth, Markus
Due to the large stored energies in both magnets and particle beams, the Large Hadron Collider (LHC) requires a large inventory of machine protection systems, as e.g. powering interlock systems,...
Texas Corridor 6. Performing Organization Code 7. Author(s) (2006)
Robert Harrison, Yi-chang Chiu, Mike Schofield, Lisa Loftus-otway, Peter Siegesmund, Hua Yang, ...
The Trans-Texas Corridor (TTC) will provide relatively few links to by-passed metropolitan areas, and it is highly likely that inland ports or groups of “big box ” outlets will be developed close...
Er A. Auer, Gerald Baumgartner, David E. Bernholdt, Alina Bibireata, Daniel Cociorva, Xiaoyang Gao, ...
As both electronic structure methods and the computers on which they are run become increasingly complex, the task of producing robust, reliable, high-performance implemen-tations of methods at a...
Sangeetha Madangopal, Under Direction, Saeid Belkasim, Robert Harrison, Sangeetha Madangopal, Sangeetha Madangopal
Comparing protein sequences is an essential procedure that has many applications in the field of bioinformatics. The recent advances in computational capabilities and algorithm design, simplified the...
Bernard Chen, Phang C. Tai, Robert Harrison, Yi Pan, Senior Member
Abstract — Protein sequence motifs information is very important to the analysis of biologically significant regions. The conserved regions have the potential to determine the conformation,...
Mendes, Emilia, Lokan, Chris, Harrison, Robert, Triggs, Christopher
Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the...
Hae-jin Hu, Yi Pan, Senior Member, Robert Harrison, Phang C. Tai
Abstract—Prediction of protein secondary structures is an important problem in bioinformatics and has many applications. The recent trend of secondary structure prediction studies is mostly based...
Harrison, Robert, Wardell-Johnson, Grant, McAlphine, Clive
This paper examines the effectiveness of a rainforest reforestation program (the Community Rainforest Reforestation Program in north-eastern Queensland, Australia) in providing amenity and...
Harrison, Robert, Wardell-Johnson, Grant, McAlphine, Clive
This paper examines the effectiveness of a rainforest reforestation program (the Community Rainforest Reforestation Program in north-eastern Queensland, Australia) in providing amenity and...
A grafting approach to obtain site-specific metal-binding properties of EF-hand proteins (2003)
Ye, Yiming, Shealy, Sarah, Lee, Hsiau-Wei, Torshin, Ivan, Harrison, Robert, Yang, Jenny J.
The EF‐hand calcium‐binding loop III from calmodulin was inserted with glycine linkers into the scaffold protein CD2.D1 at three locations to study site‐specific calcium binding...
A High-Level Approach to Synthesis of High-Performance Codes for Quantum Chemistry (2002)
Gerald Baumgartner, David E. Bernholdt, Daniel Cociorva, Robert Harrison, So Hirata, Chi-chung Lam, ...
This paper discusses an approach to the synthesis of high-performance parallel programs for a class of computations encountered in quantum chemistry and physics. These computations are expressible as...
Gerald Baumgartner, David E. Bernholdt, Daniel Cociorva, Robert Harrison, Chi-Chung Lam, Marcel Nooijen, ...
This paper discusses a program synthesis system to facilitate the generation of high-performance parallel programs for a class of computations encountered in quantum chemistry and physics. These...
Space-Time Trade-Off Optimization for a Class of Electronic Structure Calculations (2002)
Daniel Cociorva, Gerald Baumgartner, Chi-chung Lam, J. Ramanujam, Marcel Nooijin, David E. Bernholdt, ...
The accurate modeling of the electronic structure of atoms and molecules is very computationally intensive. Many models of electronic structure, such as the Coupled Cluster approach, involve...
Metal binding affinity and structural properties of an isolated EF-loop in a scaffold protein (2001)
Ye, Yiming, Lee, Hsiau-Wei, Yang, Wei, Shealy, Sarah J., Wilkins, Anna L., Liu, Zhi-ren, ...
To establish an approach to obtain the site-specific calcium binding affinity of EF-hand proteins, we have successfully designed a series of model proteins, each containing the EF-hand...
Authenticity in covert cryptography / (2000)
Thesis (M.S. in Computer Science)--University of Wisconsin--Milwaukee, 2000.
6. Performing Organization Code (1998)
Robert Harrison, Miguel Figliozzi
Research performed in cooperation with the U.S. Department of Transportation, Federal Highway Administration, and the
Adaptive Resource Management for Scalable, Dependable Real-Time Systems (1998)
Lonnie Welch, Prashant Shirolkar, Shafqat Anwar, Terry Sergeant, Behrooz Shirazi, Binoy Ravindran, ...
This paper presents middleware services that support dynamic real-time systems through adaptive resource management. The middleware services have been implemented and employed for components of a...
Performance and Experience with LAPI - a New High-Performance (1998)
Gautam Shah, Jarek Nieplocha, Jamshed Mirza, Chulho Kim, Robert Harrison, Rama K. Govindaraju, ...
LAPI is a low-level, high-performance communication interface available on the IBM RS/6000 SP system. It provides an activemessage-like interface along with remote memory copy and synchronization...
Explicit Management of Memory Hierarchy (1996)
Jarek Nieplocha, Robert Harrison, Ian Foster
All scalable parallel computers feature a memory hierarchy, in which some locations are “closer ” to a particular processor than others. The hardware in a particular system may support a shared...
Development and characterisation of thin film electric fuselinks. (1994)
Thesis (Ph. D.)--University of Nottingham, 1994.
HARRISON, ROBERT, SAVLA, NAVIN, KAFETZ, KALMAN
We studied 1303 of the 1471 elderly people resident in Local Authority homes, NHS long-stay wards (medical and psychiatric), private and voluntary homes and Local Authority sheltered housing or in...
Includes bibliographical references (leaves 28-29).
Some Notices of the Stepney Family (1870)
In the thirty-eighth year of the reign of King Henry 8th a grant was issued from the King to Ralph Stepney, in exhange for his property by the Thames river, of the manor of Aldenham, in the parish of...
Tamayo, Alfred G., Bharti, Ajit, Trujillo, Carolina, Harrison, Robert, Murphy, John R.
The delivery of the diphtheria toxin catalytic domain (DTA) from acidified endosomes into the cytoplasm of eukaryotic cells requires protein–protein interactions between the toxin and a cytosolic...
An Inland Port Location-Allocation Model for a Regional Intermodal Goods Movement System
Mansour Rahimi, Ardavan Asef-Vaziri, Robert Harrison
This research identified and analysed a number of inland port sites in the five counties surrounding Los Angeles, using a location-allocation methodology. It also considered the inland ports'...
Algorithmic Discovery of Methylation “Hot Spots” in DNA from Lymphoma Patients
Papageorgio, Chris, Harrison, Robert, Rahmatpanah, Farahnaz B., Taylor, Kristen, Davis, Wade, Caldwell, Charles W.
The computational aspects of the problem in this paper involve, firstly, selective mapping of methylated DNA clones according to methylation level and, secondly, extracting motif information from all...
Salazar, Gloria, Falcon-Perez, Juan M., Harrison, Robert, Faundez, Victor
Non-covalent and covalent homo-oligomerization of membrane proteins regulates their subcellular localization and function. Here, we described a novel oligomerization mechanism affecting solute...