Boer, Marco De, Nielsen, Peter S., Bebelman, Jan-Paul, Heerikhuizen, Harm Van, Andersen, Helge A., Planta, Rudi J.
Expression of the BAP3 gene of Saccharomyces cerevisiae, encoding a branched chain amino acid permease, is induced in response to the availability of several naturally occurring amino acids in the...
Lascaris, Romeo F., Groot, Ellen De, Hoen, Peter-Bramt, Mager, Willem H., Planta, Rudi J.
In vivo mutational analysis of the yeast RPS28A ribosomal protein (rp-)gene promoter demonstrated that both the Abf1p binding site and the adjacent T-rich element are essential for efficient...
Gonçalves, Paula M., Griffioen, Gerard, Minnee, Rob, Bosma, Mariska, Kraakman, Leonard S., Mager, Willem H., ...
All ribosomal protein (rp) gene promoters from Sac-charomyces cerevlslae studied so far contain either (usually two) binding sites for the global gene regulator Rap1p or one binding site for another...
Teunissen, Yvonne, Geraerts, Wÿnand P.M., Van Heerikhoizen, Harm, Planta, Rudi J., Joosse, Joos
We isolated a cDNA encoding a cytochrome P450 from the mollusc Lymnaea stagnalis. The mRNA is 2.1 nucleotides long and contains an open reading frame encoding a protein of 546 amino acids. A...
Kluyveromyces contains a functional ABF1-homologue (1992)
Gonçalves, Paula M., Maurer, Kick, Mager, Willem H., Planta, Rudi J.
ABF1 is a multifunctional protein present in Saccharomyces cerevisiae, involved in transcription-activation and -repression as well as in DNA-replication. Several lines of evidence indicate the...
Kulkens, Tanja, Riggs, Daniel L., Heck, J.Danis, Planta, Rudi J., Nomura, Masayasu
Using an in vitro transcription system for Saccharomyces cerevisiae RNA polymerase I, we have analyzed Pol I promoter deletion mutants and mapped the boundaries of the promoter between positions...
Kraakman, Leonard S., Mager, Willem H., Maurer, Kick T.C., Nieuwint, Rene T.M., Planta, Rudi J.
Transcription of the majority of the ribosomal protein (rp) genes in yeast is activated through common cw-acting elements, designated RPG-boxes. These elements have been shown to act as specific...
Human pancreatic amylase is encoded by two different genes (1988)
Groot, Peter C., Bleeker, Maria J., Pronk, Jan C., Arwert, Fré, Mager, Willem H., Planta, Rudi J., ...
Herruer, Martien H., Mager, Willem H., Raué, Hendrik A., Verken, Peter, Wilms, Evelien, Planta, Rudi J.
Shifting the temperature of a yeast culture from 23° to 36°C results in a sudden and severe (>85%) decline in the cellular levels of ribosomal protein (rp-)mRNAs. Recovery during continued growth...
Transcriptional control of yeast ribosomal protein synthesis during carbon-source upshift (1987)
Herruer, Martien H., Mager, Willem H., Woudt, Lambertus P., Nieuwint, René T.M., Wassenaar, Gertrude M., Groeneveld, Philip, ...
Shifting a yeast culture from an ethanol-based medium to a glucose-based medium causes a coordinate increase of the cellular levels of ribosomal protein mRNAs by about a factor 4 within 30 min....
Analysis of upstream activation sites of yeast ribosomal protein genes (1987)
Woudt, Lambertus P., Mager, Willem H., M.Nieuwint, René T., Wassenaar, Gertrude M., Van Der Kuyl, Antoinette C., Murre, Jan J., ...
Transcription of the gene encoding yeast ribosomal protein L25 was previously shown to be activated through tandemly arranged upstream sequence elements that most rp-genes in yeast have in common. A...
The genes for yeast ribosomal proteins S24 and L46 are adjacent and divergently transcribed (1985)
Leer, Robert J., Kraakman, Paul, Mager, Wilem H., Planta, Rudi J.
Unlike most yeast ribosomal protein genes Studied so far the genes coding for S24 and L46 are adjacent on the genome. Sequence analysis showed that the two genes are transcribed divergently, their...
Correct removal by splicing of a Neurospora intron in yeast (1985)
Woudt, Lambertus P., Mager, Willem H., Planta, Rudi J.
Processing of intron-containing nuclear messenger RNAs in yeast requires an internal conserved sequence (ICS) element, UACUAAC. Similar elements ($${\hbox{ ugCU }}_{\hbox{ G }}^{\hbox{ A }}\hbox{ AC...
Yeast contains two functional genes coding for ribosomal protein S10 (1985)
Leer, Robert J., Molenaar, Constance M.T., Witsenboer, Hanneke M.A., Mager, Willem H., Planta, Rudi J.
The DNA sequence of the second copy of the gene coding for yeast ribosomal protein S10 was determined and compared with the sequence of the firat gene-copy. In addition, the sites at which the...
Klootwijk, Jacobus, Verbeet, Martin Ph., Veldman, Geertruida M., Van Heerikhuizen, Harm, Bogerd, Jan, ...
We have performed a detailed analyais of the transcription initiation of the rRNA operon in the yeast Saccharomyces carlsbergensis. Electron microscopic analysis of R-looped pre-rRNA molecules...
Verbeet, Martin Ph., Klootwijk, Jacobus, Van Heerikhuizen, Harm, Fontijn, Ruud D., Vreugdenhil, Erno, Planta, Rudi J.
To identify DNA elements involved in the initiation of rRNA transcription in yeast we located the start site of the rRNA operon of Kluyveromyces lactis and Hansenula wingei both members of the...
Structural comparison of yeast ribosomal protein genes (1984)
Leer, Robert J., Hagendoorn, Mark J.M., Mager, Willem H., Planta, Rudi J.
The primary structure of the genes encoding the yeast ribosomal proteins L17a and L25 was determined, as well as the positions of the 5′- and 3′-termini of the corresponding mRNAS. Comparison of...
Woudt, Lambertus P., Pastink, Albert, Kempers-Veenstra, Annemarie E., Jansen, Antonius E.M., Mager, Willern H., Planta, Rudi J.
Sequences coding for histone H3 and H4 of Neurospora crassa could be identified in genomic digests with the use of the corresponding genes from sea urchin and X. laevis as hybridization probes. A 2.6...
The structure of the gene coding for the phosphorylated ribosomal protein S10 in yeast (1982)
Leer, Robert J., Molenaar, Constance M.Th., Cohen, Louis H., Mager, Willem H., Planta, Rudi J.
From previous studies on cloned yeast ribosomal protein genes we obtained evidence that a large number of them contain an intron [Bollen et al. (1982) Gene 18, 29–38]. In the temperature-sensitive...
The primary and secondary structure of yeast 26S rRNA (1981)
Veldman, Geertruida M., Klootwijk, Jacobus, Planta, Rudi J., Branlant, Christiane, Krol, Alain, ...
We present the sequence of the 26S rRNA of the yeast Saccharomyces carlsbergensis as inferred from the gene sequence. The molecule is 3393 nucleotides long and consists of 48% G+C; 30 of the 43...
Raué, Hendrik A., Lorenz, Siegfried, Erdmann, Volker A., Planta, Rudi J.
Bacillus stearothermophilus 50S ribosomal subunits were reconstituted in vitro using artificial 5S RNA molecules constructed by combining parts of major and minor type (Raué et al. (1976)...
Veldman, Geertruida M., Klootwijk, Jacobus, Van Heerikhuizen, Harm, Planta, Rudi J.
We have determined the nucleotide sequence of part of a cloned yeast ribosomal RNA operon extending from the 5.8S RNA gene downstream into the 5′-terminal region of the 26S RNA gene. We mapped the...
Structural features of Baacillus precursor 5S RNA involved in the interaction with RNAase M5 (1980)
Stiekema, Willem J., Raué, Hendrik A., Duin, Mary M.C., Planta, Rudi J.
Mature 5S (m5S) RNA from Bacillus licheniformis specifically and almost completely inhibits in vitro maturation of Bacillus precursor 5S (p5S) RNA, showing that the maturation enzyme RNAase M5 can...
Nucleotide sequence analysis of precursor 5S RNA from Bacillus licheniformis (1980)
Stiekema, Willem J., Leede-Twente, Rita De, Raué, Hendrik A., Planta, Rudi J.
The complete nucleotide sequences of the various precursor 5S RNA species occurring in Bacillus licheniformis have been elucidated. The B. licheniformis precursors contain a 5′-precursor-specific...
Some characteristics of processing sites in ribosomal precursor RNA of yeast (1980)
Veldman, Geertruida M., Brand, Reindert C., Klootwijk, Jacobus, Planta, Rudi J.
The DNA sequence of the intergenic region between the 17S and 5.8S rRNA genes of the ribosomal RNA operon in yeast has been determined. In this region the 37S ribosomal precursor RNA is specifically...
Sequence analysis and in vitro maturation of five precursor 5S RNAs from Bacillus Q (1980)
Stiekema, Willem J., Raué, Hendrik A., Planta, Rudi J.
Bacillus Q, which is closely related to B.subtilis, contains at least six different precursors of 5S rRNA. The complete nucleotide sequences of four of these precursors, as well as the major part of...
Pseudouridylation of yeast ribosomal precursor RNA (1979)
Brand, Reindert C., Klootwijk, Jacobus, Sibum, Cornelis P., Planta, Rudi J.
The pseudouridylation of ribosomal RNA of Saccharomyces carlsbergensis was investigated with respect to its timing during the maturation of rRNA and its sequence specificity. Analysis of 37-S RNA,...
Extrachromosomal circular ribosomal DNA in the yeast Saccharomyces carlsbergensis (1979)
Meyerink, Jan H., Klootwijk, Jacobus, Planta, Rudi J., Van Der Ende, Arie
Purified ribosomal DNA from Saccharomyces carlsbergensis contains a small proportion of circular DNA molecules with a contour length of 3 um or integral multiples thereof. Hybridization of yeast...
The primary transcript of the ribosomal repeating unit in yeast (1979)
Klootwijk, Jacobus, Jonge, Petrus De, Planta, Rudi J.
Endgroup analysis of 37S ribosomal precursor RNA from Saccharomyces carlsbergensis has revealed that the major 5′ endgroup is pppA-Up, with a molar yield of 0.8. This shows that most, if not all,...
Meyerink, Jan H., Retèl, Jan, Raué, Hendrik A., Planta, Rudi J., Van Der Ende, Arie
The genetic organization of the multiple ribosomal transcription units (RTUs) on the genome of the yeast Saccharomyces carlsbergensis was studied by electron microscopy of purified ribosomal DNA...
Sequence of the 3'-terminal 21 nucleotides of yeast 17S ribosomal RNA (1977)
De Jonge, Peter, Klootwijk, Jacobus, Planta, Rudi J.
The sequence of the 3'-terminal 21 nucleotides of 17S ribosomal RNA from the yeast Saccharomyces carlsbergensis has been determined to be (Y)G-mS2A-mS2A-C-U-C-G-C-G-G-A-A-G-G-A-U-C-A-U-U-AOH. This...
Boer, Marco De, Nielsen, Peter S., Bebelman, Jan-Paul, Heerikhuizen, Harm Van, Andersen, Helge A., Planta, Rudi J.
Expression of the BAP3 gene of Saccharomyces cerevisiae, encoding a branched chain amino acid permease, is induced in response to the availability of several naturally occurring amino acids in the...
Lascaris, Romeo F., De Groot, Ellen, Hoen, Peter-Bram’t, Mager, Willem H., Planta, Rudi J.
In vivo mutational analysis of the yeast RPS28A ribosomal protein (rp-)gene promoter demonstrated that both the Abf1p binding site and the adjacent T-rich element are essential for efficient...
Transcript analysis of 1003 novel yeast genes using high-throughput northern hybridizations
Brown, Alistair J.P., Planta, Rudi J., Restuhadi, Fajar, Bailey, David A., Butler, Philip R., Cadahia, Jose L., ...
The expression of 1008 open reading frames (ORFs) from the yeast Saccharomyces cerevisiae has been examined under eight different physiological conditions, using classical northern analysis. These...
Isolation and Characterization of Chloroplast DNA from the Duckweed Spirodela oligorrhiza
Van Ee, Jan H., Planta, Rudi J.
Chloroplast DNA of the duckweed Spirodela oligorrhiza, isolated by CsCl gradient centrifugation, was characterized by its buoyant density, guanine + cytosine content, melting behavior, circularity,...
Boer, Marco De, Nielsen, Peter S., Bebelman, Jan-Paul, Heerikhuizen, Harm Van, Andersen, Helge A., Planta, Rudi J.
Expression of the BAP3 gene of Saccharomyces cerevisiae, encoding a branched chain amino acid permease, is induced in response to the availability of several naturally occurring amino acids in the...
Lascaris, Romeo F., De Groot, Ellen, Hoen, Peter-Bram’t, Mager, Willem H., Planta, Rudi J.
In vivo mutational analysis of the yeast RPS28A ribosomal protein (rp-)gene promoter demonstrated that both the Abf1p binding site and the adjacent T-rich element are essential for efficient...
Transcript analysis of 1003 novel yeast genes using high-throughput northern hybridizations
Brown, Alistair J.P., Planta, Rudi J., Restuhadi, Fajar, Bailey, David A., Butler, Philip R., Cadahia, Jose L., ...
The expression of 1008 open reading frames (ORFs) from the yeast Saccharomyces cerevisiae has been examined under eight different physiological conditions, using classical northern analysis. These...
Isolation and Characterization of Chloroplast DNA from the Duckweed Spirodela oligorrhiza
Van Ee, Jan H., Planta, Rudi J.
Chloroplast DNA of the duckweed Spirodela oligorrhiza, isolated by CsCl gradient centrifugation, was characterized by its buoyant density, guanine + cytosine content, melting behavior, circularity,...