Rui Mei

Publication List Details

Period

1987 - 2008

Number

26

Co-Authors

Expression Analysis and provided on this web-site. (2008)

Earl Hubbell, Wei-min Liu, Rui Mei

ABSTRACT. This is supplemental data extracted from the paper Robust Estimators for

CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays (2006)

Huang, Jing, Wei, Wen, Chen, Joyce, Zhang, Jane, Liu, Guoying, Di, Xiaojun, ...

Abstract Background DNA copy number alterations are one of the main characteristics of the cancer cell karyotype and can contribute to the complex phenotype of these cells. These alterations can lead...

Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays (2005)

Di, Xiaojun, Matsuzaki, Hajime, Webster, Teresa A., Hubbell, Earl, Liu, Guoying, Dong, Shoulian, ...

Motivation: A high density of single nucleotide polymorphism (SNP) coverage on the genome is desirable and often an essential requirement for population genetics studies. Region-specific or...

Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays (2005)

Di, Xiaojun, Matsuzaki, Hajime, Webster, Teresa A., Hubbell, Earl, Liu, Guoying, Dong, Shoulian, ...

Motivation: High density of SNP coverage on the genome is desirable and often an essential requirement for population genetics studies. Region-specific or chromosome-specific linkage studies also...

Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array (2004)

Matsuzaki, Hajime, Loi, Halina, Dong, Shoulian, Tsai, Ya-Yu, Fang, Joy, Law, Jane, ...

The analysis of single nucleotide polymorphisms (SNPs) is increasingly utilizedto investigate the genetic causes of complex human diseases. Here we present a high-throughput genotyping platform that...

Algorithms for large-scale genotyping microarrays (2003)

Liu, Wei-min, Di, Xiaojun, Yang, Geoffrey, Matsuzaki, Hajime, Huang, Jing, Mei, Rui, ...

Motivation: Analysis of many thousands of single nucleotide polymorphisms (SNPs) across whole genome is crucial to efficiently map disease genes and understanding susceptibility to diseases, drug...

Robust estimators for expression analysis (2002)

Hubbell, Earl, Liu, Wei-Min, Mei, Rui

Motivation: We consider the problem of estimating values associated with gene expression from oligonucleotide arrays. Such estimates should linearly track concentration, yield non-negative results,...

Spectroscopic characterization of CP26, a chlorophyll a/b binding protein of the higher plant Photosystem II complex (1994)

Van Amerongen, Herbert, Van Bolhuis, Bauke M., Betts, Scott D., Mei, Rui, Van Grondelle, Rienk, Yocum, Charles F., ...

A spectroscopic study is presented of the minor chlorophyll a / b binding protein CP26 isolated from spinach by means of a dodecylmaltoside/betaine washing procedure. The preparations are...

Characterization of inhibitory effects of NH 2 OH and its N-methyl derivatives on the O 2 -evolving complex of Photosystem II (1993)

Yocum, Charles F., Mei, Rui

Inorganic cofactors (Mn, Ca 2+ and Cl - ) are essential for oxidation of H 2 O to O 2 by Photosystem II. The Mn reductants NH 2 OH and its N-methyl derivatives have been employed as probes to further...

Hydrogen peroxide as an alternate substrate for the oxygen-evolving complex (1987)

Frasch, Wayne D., Mei, Rui

Photosystem II reaction centers evolve O2 in the dark when H2O2 is added as a substrate. Although some of this activity can be attributed to catalase, as much as 75% of the activity was not affected...

Probe selection for high-density oligonucleotide arrays

Mei, Rui, Hubbell, Earl, Bekiranov, Stefan, Mittmann, Mike, Christians, Fred C., Shen, Mei-Mei, ...

High-density oligonucleotide microarrays enable simultaneous monitoring of expression levels of tens of thousands of transcripts. For accurate detection and quantitation of transcripts in the...

Killing by Ampicillin and Ofloxacin Induces Overlapping Changes in Escherichia coli Transcription Profile

Kaldalu, Niilo, Mei, Rui, Lewis, Kim

The basis of bactericidal versus bacteriostatic action of antibiotics and the mechanism of bacterial cell death are largely unknown. Related to this important issue is the essential invulnerability...

Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array

Matsuzaki, Hajime, Loi, Halina, Dong, Shoulian, Tsai, Ya-Yu, Fang, Joy, Law, Jane, ...

The analysis of single nucleotide polymorphisms (SNPs) is increasingly utilizedto investigate the genetic causes of complex human diseases. Here we present a high-throughput genotyping platform that...

Probe selection for high-density oligonucleotide arrays

Mei, Rui, Hubbell, Earl, Bekiranov, Stefan, Mittmann, Mike, Christians, Fred C., Shen, Mei-Mei, ...

High-density oligonucleotide microarrays enable simultaneous monitoring of expression levels of tens of thousands of transcripts. For accurate detection and quantitation of transcripts in the...

Killing by Ampicillin and Ofloxacin Induces Overlapping Changes in Escherichia coli Transcription Profile

Kaldalu, Niilo, Mei, Rui, Lewis, Kim

The basis of bactericidal versus bacteriostatic action of antibiotics and the mechanism of bacterial cell death are largely unknown. Related to this important issue is the essential invulnerability...

Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array

Matsuzaki, Hajime, Loi, Halina, Dong, Shoulian, Tsai, Ya-Yu, Fang, Joy, Law, Jane, ...

The analysis of single nucleotide polymorphisms (SNPs) is increasingly utilizedto investigate the genetic causes of complex human diseases. Here we present a high-throughput genotyping platform that...

Latino Populations: A Unique Opportunity for the Study of Race, Genetics, and Social Environment in Epidemiological Research

González Burchard, Esteban, Borrell, Luisa N., Choudhry, Shweta, Naqvi, Mariam, Tsai, Hui-Ju, Rodriguez-Santana, Jose R., ...

Latinos are the largest minority population in the United States. Although usually classified as a single ethnic group by researchers, Latinos are heterogeneous from cultural, socioeconomic, and...