De novo transcriptome assembly with ABySS (2009)
Birol, Inanç, Jackman, Shaun D., Nielsen, Cydney B., Qian, Jenny Q., Varhol, Richard, Stazyk, Greg, ...
Motivation: Whole transcriptome shotgun sequencing data from non-normalized samples offer unique opportunities to study the metabolic states of organisms. One can deduce gene expression levels using...
Conifers have a unique small RNA silencing signature (2008)
Downloaded From, Elena V. Dolgosheina, Ryan D. Morin, Gozde Aksay, S. Cenk Sahinalp, Vincent Magrini, ...
Access the most recent version at doi: 10.1261/rna.1052008
Downloaded From, Ryan D. Morin, Gozde Aksay, Elena Dolgosheina, H. Alex, Er Ebhardt, ...
Comparative analysis of the small RNA transcriptomes of Pinus
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa (2008)
Morin, Ryan D., Aksay, Gozde, Dolgosheina, Elena, Ebhardt, H. Alexander, Magrini, Vincent, Mardis, Elaine R., ...
The diversity of microRNAs and small-interfering RNAs has been extensively explored within angiosperms by focusing on a few key organisms such as Oryza sativa and Arabidopsis thaliana. A deeper...
Morin, Ryan D., OConnor, Michael D., Griffith, Malachi, Kuchenbauer, Florian, Delaney, Allen, Prabhu, Anna-Liisa, ...
MicroRNAs (miRNAs) are emerging as important, albeit poorly characterized, regulators of biological processes. Key to further elucidation of their roles is the generation of more complete lists of...
In-depth characterization of the microRNA transcriptome in a leukemia progression model (2008)
Kuchenbauer, Florian, Morin, Ryan D., Argiropoulos, Bob, Petriv, Oleh I., Griffith, Malachi, Heuser, Michael, ...
MicroRNAs (miRNAs) have been shown to play important roles in physiological as well as multiple malignant processes, including acute myeloid leukemia (AML). In an effort to gain further insight into...
Conifers have a unique small RNA silencing signature (2008)
Dolgosheina, Elena V., Morin, Ryan D., Aksay, Gozde, Sahinalp, S. Cenk, Magrini, Vincent, Mardis, Elaine R., ...
Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as...
LongSAGE profiling of nine human embryonic stem cell lines (2007)
Hirst, Martin, Delaney, Allen, Rogers, Sean A, Schnerch, Angelique, Persaud, Deryck R, O'Connor, Michael D, ...
Abstract To facilitate discovery of novel human embryonic stem cell (ESC) transcripts, we generated 2.5 million LongSAGE tags from 9 human ESC lines. Analysis of this data revealed that ESCs express...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
Morin, Ryan D., Chang, Elbert, Petrescu, Anca, Liao, Nancy, Griffith, Malachi, Kirkpatrick, Robert, ...
Sequencing of full-insert clones from full-length cDNA libraries from both Xenopus laevis and Xenopus tropicalis has been ongoing as part of the Xenopus Gene Collection Initiative. Here we present...
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
McLeod, Michael P., Warren, René L., Hsiao, William W. L., Araki, Naoto, Myhre, Matthew, Fernandes, Clinton, ...
Rhodococcus sp. RHA1 (RHA1) is a potent polychlorinated biphenyl-degrading soil actinomycete that catabolizes a wide range of compounds and represents a genus of considerable industrial interest....
LongSAGE profiling of nine human embryonic stem cell lines
Hirst, Martin, Delaney, Allen, Rogers, Sean A, Schnerch, Angelique, Persaud, Deryck R, O'Connor, Michael D, ...
Analysis of a 2.6 million longSAGE sequence tag resource generated from nine human embryonic stem cell lines reveals an enrichment of RNA binding proteins and novel ES-specific transcripts.
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
Morin, Ryan D., Aksay, Gozde, Dolgosheina, Elena, Ebhardt, H. Alexander, Magrini, Vincent, Mardis, Elaine R., ...
The diversity of microRNAs and small-interfering RNAs has been extensively explored within angiosperms by focusing on a few key organisms such as Oryza sativa and Arabidopsis thaliana. A deeper...
Morin, Ryan D., O’Connor, Michael D., Griffith, Malachi, Kuchenbauer, Florian, Delaney, Allen, Prabhu, Anna-Liisa, ...
MicroRNAs (miRNAs) are emerging as important, albeit poorly characterized, regulators of biological processes. Key to further elucidation of their roles is the generation of more complete lists of...
Conifers have a unique small RNA silencing signature
Dolgosheina, Elena V., Morin, Ryan D., Aksay, Gozde, Sahinalp, S. Cenk, Magrini, Vincent, Mardis, Elaine R., ...
Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as...
In-depth characterization of the microRNA transcriptome in a leukemia progression model
Kuchenbauer, Florian, Morin, Ryan D., Argiropoulos, Bob, Petriv, Oleh I., Griffith, Malachi, Heuser, Michael, ...
MicroRNAs (miRNAs) have been shown to play important roles in physiological as well as multiple malignant processes, including acute myeloid leukemia (AML). In an effort to gain further insight into...