CHAPTER 2 Phylogenomics and Molecular Evolution (2008)
Of Polyomaviruses, Keith A. Cr, Marcos Pérez-losada, Ryan G. Christensen, David A. Mcclellan, Raphael P. Viscidi
We provide in this chapter an overview of the basic steps to reconstruct evolutionary relationships through standard phylogeny estimation approaches as well as network approaches for sequences more...
Noyes, Marcus B., Christensen, Ryan G., Wakabayashi, Atsuya, Stormo, Gary D., Brodsky, Michael H., Wolfe, Scot A.
We describe the comprehensive characterization of homeodomain DNA-binding specificities from a metazoan genome. The analysis of all 84 independent homeodomains from D. melanogaster reveals the...
Comparing Phylogenetic Codivergence between Polyomaviruses and Their Hosts
Pérez-Losada, Marcos, Christensen, Ryan G., McClellan, David A., Adams, Byron J., Viscidi, Raphael P., Demma, James C., ...
Seventy-two full genomes corresponding to nine mammalian (67 strains) and two avian (5 strains) polyomavirus species were analyzed using maximum likelihood and Bayesian methods of phylogenetic...
Comparing Phylogenetic Codivergence between Polyomaviruses and Their Hosts
Pérez-Losada, Marcos, Christensen, Ryan G., McClellan, David A., Adams, Byron J., Viscidi, Raphael P., Demma, James C., ...
Seventy-two full genomes corresponding to nine mammalian (67 strains) and two avian (5 strains) polyomavirus species were analyzed using maximum likelihood and Bayesian methods of phylogenetic...