Sebestyén, Endre, Nagy, Tibor, Suhai, Sándor, Barta, Endre
Abstract Background The comparative genomic analysis of a large number of orthologous promoter regions of the chordate and plant genes from the DoOP databases shows thousands of conserved motifs....
Automatic detection of exonic splicing enhancers (ESEs) using SVMs (2008)
Mersch, Britta, Gepperth, Alexander, Suhai, Sándor, Hotz-Wagenblatt, Agnes
Abstract Background Exonic splicing enhancers (ESEs) activate nearby splice sites and promote the inclusion (vs. exclusion) of exons in which they reside, while being a binding site for SR proteins....
Mersch, Britta, Sela, Noa, Ast, Gil, Suhai, Sándor, Hotz-Wagenblatt, Agnes
Abstract Background Transposed elements (TEs) are known to affect transcriptomes, because either new exons are generated from intronic transposed elements (this is called exonization ), or the...
Stepwise Solvation of an Amino Acid: The Appearance of Zwitterionic Structures (2007)
Blom, Martine N., Compagnon, Isabelle, Polfer, Nick C., Helden, Gert Von, Meijer, Gerard, Suhai, Sándor, ...
How many solvent molecules are required to solvate an amino acid? This apparently simple question, which relates to the number of solvent molecules necessary to change the amino acid from its...
Genomic analysis of Xenopusorganizer function (2006)
Hufton, Andrew L, Vinayagam, Arunachalam, Suhai, Sándor, Baker, Julie C
Abstract Background Studies of the Xenopus organizer have laid the foundation for our understanding of the conserved signaling pathways that pattern vertebrate embryos during gastrulation. The two...
GOPET: A tool for automated predictions of Gene Ontology terms (2006)
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
Abstract Background Vast progress in sequencing projects has called for annotation on a large scale. A Number of methods have been developed to address this challenging task. These methods, however,...
Arunachalam Vinayagam, Coral Del Val, Falk Schubert, Heinz Glatting, Sándor Suhai, Rainer König, ...
© 2006Vinayagam et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Polfer,Nick C., Paizs,Béla, Compagnon,Isabelle, Suhai,Sándor, Meijer,Gerard, ...
Infrared multiple-photon dissociation spectroscopy is effected on the K⁺ tagged aromatic amino acids tyrosine and phenylalanine, as well as the K⁺ tagged peptides bradykinin fragment 1-5 and...
Polfer, Nick C., Paizs, Béla, Compagnon, Isabelle, Suhai, Sándor, Meijer, Gerard, ...
Infrared multiple-photon dissociation spectroscopy is effected on the K⁺ tagged aromatic amino acids tyrosine and phenylalanine, as well as the K⁺ tagged peptides bradykinin fragment 1-5 and...
Applying Support Vector Machines for Gene ontology based gene function prediction (2004)
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
Abstract Background The current progress in sequencing projects calls for rapid, reliable and accurate function assignments of gene products. A variety of methods has been designed to annotate...
Function Prediction, Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Karl-heinz Glatting, ...
This is an open-access article distributed under the terms of the Creative Commons Attribution License
Chevreux, Bastien, Pfisterer, Thomas, Drescher, Bernd, Driesel, Albert J., Müller, Werner E.G., Wetter, Thomas, ...
We present an EST sequence assembler that specializes in reconstruction of pristine mRNA transcripts, while at the same time detecting and classifying single nucleotide polymorphisms (SNPs) occuring...
Chevreux, Bastien, Pfisterer, Thomas, Drescher, Bernd, Driesel, Albert J., Müller, Werner E.G., Wetter, Thomas, ...
We present an EST sequence assembler that specializes in reconstruction of pristine mRNA transcripts, while at the same time detecting and classifying single nucleotide polymorphisms (SNPs) occuring...
Estannotator: a tool for high throughput est annotation (2003)
Agnes Hotz-wagenblatt, Thomas Hankeln, Peter Ernst, Karl-heinz Glatting, Erwin R. Schmidt, Sándor Suhai
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
ESTAnnotator: a tool for high throughput EST annotation (2003)
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
A task framework for the web interface W2H (2003)
Ernst, Peter, Glatting, Karl-Heinz, Suhai, Sándor
Summary: The W3H task framework allows the execution of compound jobs utilizing the description of work and data flows in a heterogeneous bioinformatics environment using meta-data information. By...
Prediction of hypervariable CDR-H3 loop structures in antibodies (1995)
Reczko, Martin, Martin, Andrew C.R., Bohr, Henrik, Suhai, Sándor
The structure of the most variable antibody hypervariable loop, CDR-H3, has been predicted from amino acid sequence alone. In contrast to other approaches predictions are made for loop lengths up to...
ESTAnnotator: a tool for high throughput EST annotation
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
Chevreux, Bastien, Pfisterer, Thomas, Drescher, Bernd, Driesel, Albert J., Müller, Werner E.G., Wetter, Thomas, ...
We present an EST sequence assembler that specializes in reconstruction of pristine mRNA transcripts, while at the same time detecting and classifying single nucleotide polymorphisms (SNPs) occuring...
Applying Support Vector Machines for Gene ontology based gene function prediction
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
GOPET: A tool for automated predictions of Gene Ontology terms
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
Genomic analysis of Xenopus organizer function
Hufton, Andrew L, Vinayagam, Arunachalam, Suhai, Sándor, Baker, Julie C
ESTAnnotator: a tool for high throughput EST annotation
Hotz-Wagenblatt, Agnes, Hankeln, Thomas, Ernst, Peter, Glatting, Karl-Heinz, Schmidt, Erwin R., Suhai, Sándor
In high throughput sequence analysis, it is often necessary to combine the results of contemporary bioinformatics tools, because no individual tool alone computes all the requested information....
Chevreux, Bastien, Pfisterer, Thomas, Drescher, Bernd, Driesel, Albert J., Müller, Werner E.G., Wetter, Thomas, ...
We present an EST sequence assembler that specializes in reconstruction of pristine mRNA transcripts, while at the same time detecting and classifying single nucleotide polymorphisms (SNPs) occuring...
Applying Support Vector Machines for Gene ontology based gene function prediction
Vinayagam, Arunachalam, König, Rainer, Moormann, Jutta, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, ...
GOPET: A tool for automated predictions of Gene Ontology terms
Vinayagam, Arunachalam, Del Val, Coral, Schubert, Falk, Eils, Roland, Glatting, Karl-Heinz, Suhai, Sándor, ...
Genomic analysis of Xenopus organizer function
Hufton, Andrew L, Vinayagam, Arunachalam, Suhai, Sándor, Baker, Julie C